miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 3' -54.1 NC_002512.2 + 155557 0.66 0.984954
Target:  5'- cCUUCGUCuuccUCUUCUACGGCACCg-- -3'
miRNA:   3'- cGGAGUAGc---GGAAGAUGCUGUGGgag -5'
8965 3' -54.1 NC_002512.2 + 154818 0.67 0.96233
Target:  5'- cGCCUCgacGUCGCCgcccggUCUcCccCGCCCUCc -3'
miRNA:   3'- -CGGAG---UAGCGGa-----AGAuGcuGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 214662 0.67 0.96233
Target:  5'- uCCUCccggCGCCUcg-GCGACccGCCCUCc -3'
miRNA:   3'- cGGAGua--GCGGAagaUGCUG--UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 204405 0.67 0.974241
Target:  5'- cCCUCgAUCGCCUcaaccUCauacgGCGGCGCCUg- -3'
miRNA:   3'- cGGAG-UAGCGGA-----AGa----UGCUGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 125950 0.66 0.976732
Target:  5'- uCCUCuucCGCCccUCgACGACacACCCUCg -3'
miRNA:   3'- cGGAGua-GCGGa-AGaUGCUG--UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 192630 0.68 0.955128
Target:  5'- gGCCUCA---CCUUCUACGGCAacggCUCg -3'
miRNA:   3'- -CGGAGUagcGGAAGAUGCUGUgg--GAG- -5'
8965 3' -54.1 NC_002512.2 + 166048 0.67 0.96233
Target:  5'- gGUCaUCAagGUCUUCUGCGcggGCACCgUCg -3'
miRNA:   3'- -CGG-AGUagCGGAAGAUGC---UGUGGgAG- -5'
8965 3' -54.1 NC_002512.2 + 126464 0.66 0.979042
Target:  5'- cGCCUUGuUCGCCgucgUCgucGCGuCGCCCg- -3'
miRNA:   3'- -CGGAGU-AGCGGa---AGa--UGCuGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 94023 0.67 0.968984
Target:  5'- gGCCUCGUcCGCCagCUccucggcggugacgGCGACcgggaagggcgcgggACCCUCc -3'
miRNA:   3'- -CGGAGUA-GCGGaaGA--------------UGCUG---------------UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 204011 0.67 0.974241
Target:  5'- cGCCUCuUCGgCUUCgugcgggccgACGGCgaACUCUCg -3'
miRNA:   3'- -CGGAGuAGCgGAAGa---------UGCUG--UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 98833 0.66 0.979263
Target:  5'- gGCCUCcggcgcggCGCCgUCcucccccgcggcccCGACGCCCUCg -3'
miRNA:   3'- -CGGAGua------GCGGaAGau------------GCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 858 0.66 0.981177
Target:  5'- uGCCaUUAUCaGCCccaccgCUGC-ACACCCUCc -3'
miRNA:   3'- -CGG-AGUAG-CGGaa----GAUGcUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 212989 0.68 0.946617
Target:  5'- aCCUCAUCGUCgcc-GCGGCcgucgggcccgggGCCCUCu -3'
miRNA:   3'- cGGAGUAGCGGaagaUGCUG-------------UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 185767 0.68 0.947044
Target:  5'- aCCUCGUcuaCGCCUUCUcuuuCAUCCUCg -3'
miRNA:   3'- cGGAGUA---GCGGAAGAugcuGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 172264 0.67 0.965612
Target:  5'- cGCCUCA-CGCCcgCU-CGGuCGCCCg- -3'
miRNA:   3'- -CGGAGUaGCGGaaGAuGCU-GUGGGag -5'
8965 3' -54.1 NC_002512.2 + 5864 0.66 0.976732
Target:  5'- cGCCcgCcgUGUCUUCUGCcucGGCAUUCUCg -3'
miRNA:   3'- -CGGa-GuaGCGGAAGAUG---CUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 124835 0.66 0.976732
Target:  5'- cGCCgcCGUCGCCga--GCGAgGCCCg- -3'
miRNA:   3'- -CGGa-GUAGCGGaagaUGCUgUGGGag -5'
8965 3' -54.1 NC_002512.2 + 161885 0.66 0.981177
Target:  5'- cGUCUCGUCGCUcccUCUccucGCGcCgGCCCUCc -3'
miRNA:   3'- -CGGAGUAGCGGa--AGA----UGCuG-UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 148691 0.66 0.976249
Target:  5'- cCCUCGUCGCCgcuUCgcccggaucguCGGCGCCaUCa -3'
miRNA:   3'- cGGAGUAGCGGa--AGau---------GCUGUGGgAG- -5'
8965 3' -54.1 NC_002512.2 + 187312 0.67 0.968687
Target:  5'- cGCCgc-UCGCCUc--GCGGCGCCCg- -3'
miRNA:   3'- -CGGaguAGCGGAagaUGCUGUGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.