miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 5' -59.6 NC_002512.2 + 7383 0.66 0.826243
Target:  5'- -cGGGCGGCcaGGCGCagaaggcggccACCGCCaCGUUg -3'
miRNA:   3'- uaCUUGCCGa-CCGUG-----------UGGCGGcGCAA- -5'
8966 5' -59.6 NC_002512.2 + 119827 0.66 0.826243
Target:  5'- uUGAuguuGCaGGCgauGCGCACCGCCGCc-- -3'
miRNA:   3'- uACU----UG-CCGac-CGUGUGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 167082 0.66 0.826243
Target:  5'- -cGAcauGCuGCUGGC-CACCuCCGCGUa -3'
miRNA:   3'- uaCU---UGcCGACCGuGUGGcGGCGCAa -5'
8966 5' -59.6 NC_002512.2 + 220133 0.66 0.826243
Target:  5'- -gGGGCGGCgGGUccgGCuCCGCCGCc-- -3'
miRNA:   3'- uaCUUGCCGaCCG---UGuGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 121142 0.66 0.826243
Target:  5'- --cGACGGC-GGCcgagACGCCGgCCGCGg- -3'
miRNA:   3'- uacUUGCCGaCCG----UGUGGC-GGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 207395 0.66 0.823775
Target:  5'- gAUGGACGGCUGcuGCGCGCUcauguccauggccuGCUGCa-- -3'
miRNA:   3'- -UACUUGCCGAC--CGUGUGG--------------CGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 74618 0.66 0.817959
Target:  5'- -gGAGCGGa--GCGCgagACCGCCGCGc- -3'
miRNA:   3'- uaCUUGCCgacCGUG---UGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 157876 0.66 0.817959
Target:  5'- -aGGGCGGcCUGGCGuuccuccugUACCGCUGCc-- -3'
miRNA:   3'- uaCUUGCC-GACCGU---------GUGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 126179 0.66 0.817959
Target:  5'- -gGAucAUGGC-GGCGCccccucCCGCCGCGUc -3'
miRNA:   3'- uaCU--UGCCGaCCGUGu-----GGCGGCGCAa -5'
8966 5' -59.6 NC_002512.2 + 58206 0.66 0.817959
Target:  5'- aGUGGgcGCGGC-GcGCACcCCGCgCGCGUa -3'
miRNA:   3'- -UACU--UGCCGaC-CGUGuGGCG-GCGCAa -5'
8966 5' -59.6 NC_002512.2 + 137966 0.66 0.817959
Target:  5'- -aGu-CGGCcgccgacGGCGCGCCGCCGCc-- -3'
miRNA:   3'- uaCuuGCCGa------CCGUGUGGCGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 212359 0.66 0.817959
Target:  5'- -aGAGCGaGCUGGCcgccuACGCCgacGCCGaCGUc -3'
miRNA:   3'- uaCUUGC-CGACCG-----UGUGG---CGGC-GCAa -5'
8966 5' -59.6 NC_002512.2 + 80697 0.66 0.812912
Target:  5'- -cGAGCGGCguccggggggcgagGGCGCGCgGgcCCGCGg- -3'
miRNA:   3'- uaCUUGCCGa-------------CCGUGUGgC--GGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 37195 0.66 0.809516
Target:  5'- --aGACGGCcucGGCGCGCCGCCa---- -3'
miRNA:   3'- uacUUGCCGa--CCGUGUGGCGGcgcaa -5'
8966 5' -59.6 NC_002512.2 + 123408 0.66 0.809516
Target:  5'- -cGGACGGCgaGGCGgucgagguccCGCCGCC-CGUg -3'
miRNA:   3'- uaCUUGCCGa-CCGU----------GUGGCGGcGCAa -5'
8966 5' -59.6 NC_002512.2 + 153279 0.66 0.809516
Target:  5'- cUGGuCGGCUGGCu--CCGCUGgGUc -3'
miRNA:   3'- uACUuGCCGACCGuguGGCGGCgCAa -5'
8966 5' -59.6 NC_002512.2 + 118335 0.66 0.809516
Target:  5'- -cGGACGcGCUGGUggaGCGCCccuGCCGCu-- -3'
miRNA:   3'- uaCUUGC-CGACCG---UGUGG---CGGCGcaa -5'
8966 5' -59.6 NC_002512.2 + 210915 0.66 0.809516
Target:  5'- ----cCGGCUcuccGGCAuCAUCGCCGCGa- -3'
miRNA:   3'- uacuuGCCGA----CCGU-GUGGCGGCGCaa -5'
8966 5' -59.6 NC_002512.2 + 153372 0.66 0.809516
Target:  5'- cUGGgcgGCGGCUGGCGguCCGgaGCGa- -3'
miRNA:   3'- uACU---UGCCGACCGUguGGCggCGCaa -5'
8966 5' -59.6 NC_002512.2 + 52757 0.66 0.800922
Target:  5'- -aGAACGcgcgggcccuGCUGGCGCACCcggaccuccugGUCGCGg- -3'
miRNA:   3'- uaCUUGC----------CGACCGUGUGG-----------CGGCGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.