Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8966 | 5' | -59.6 | NC_002512.2 | + | 179312 | 0.67 | 0.773403 |
Target: 5'- -cGGGCGGCgaggcgGGCagauccuGCAgCGCCGCGc- -3' miRNA: 3'- uaCUUGCCGa-----CCG-------UGUgGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 170047 | 0.66 | 0.783311 |
Target: 5'- ---cAUGGCcaUGGCcgcCGCCGCCGCGg- -3' miRNA: 3'- uacuUGCCG--ACCGu--GUGGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 167082 | 0.66 | 0.826243 |
Target: 5'- -cGAcauGCuGCUGGC-CACCuCCGCGUa -3' miRNA: 3'- uaCU---UGcCGACCGuGUGGcGGCGCAa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 162154 | 0.69 | 0.619706 |
Target: 5'- -----aGGCcGGCACGCCGaCCGCGa- -3' miRNA: 3'- uacuugCCGaCCGUGUGGC-GGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 157876 | 0.66 | 0.817959 |
Target: 5'- -aGGGCGGcCUGGCGuuccuccugUACCGCUGCc-- -3' miRNA: 3'- uaCUUGCC-GACCGU---------GUGGCGGCGcaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 154726 | 0.67 | 0.737194 |
Target: 5'- -gGAACGGCguuGCGucCGCgGCCGCGUc -3' miRNA: 3'- uaCUUGCCGac-CGU--GUGgCGGCGCAa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 154595 | 0.67 | 0.774309 |
Target: 5'- --cGACGGC-GGCAucguCGCCGCCGCc-- -3' miRNA: 3'- uacUUGCCGaCCGU----GUGGCGGCGcaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 153372 | 0.66 | 0.809516 |
Target: 5'- cUGGgcgGCGGCUGGCGguCCGgaGCGa- -3' miRNA: 3'- uACU---UGCCGACCGUguGGCggCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 153279 | 0.66 | 0.809516 |
Target: 5'- cUGGuCGGCUGGCu--CCGCUGgGUc -3' miRNA: 3'- uACUuGCCGACCGuguGGCGGCgCAa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 150536 | 0.75 | 0.320507 |
Target: 5'- --cGGCGGCcgcgagGGUACGCCGCCGCGa- -3' miRNA: 3'- uacUUGCCGa-----CCGUGUGGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 149238 | 0.69 | 0.659371 |
Target: 5'- --cGACGGacccGGCGcCGCCGCCGCGg- -3' miRNA: 3'- uacUUGCCga--CCGU-GUGGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 148995 | 0.68 | 0.688929 |
Target: 5'- cUGAAccacCGGCcGGgGgGCCGCCGCGg- -3' miRNA: 3'- uACUU----GCCGaCCgUgUGGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 148833 | 0.74 | 0.357379 |
Target: 5'- -gGGGCGGUccgGGCGCACCGCUGCc-- -3' miRNA: 3'- uaCUUGCCGa--CCGUGUGGCGGCGcaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 148131 | 0.68 | 0.67911 |
Target: 5'- aGUGAGCGuucuCUaGCGCGCCGCgGCGUg -3' miRNA: 3'- -UACUUGCc---GAcCGUGUGGCGgCGCAa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 138547 | 0.73 | 0.388953 |
Target: 5'- -cGAGCaGCUGGCaggagcggaGCGCCGCCGUGa- -3' miRNA: 3'- uaCUUGcCGACCG---------UGUGGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 137966 | 0.66 | 0.817959 |
Target: 5'- -aGu-CGGCcgccgacGGCGCGCCGCCGCc-- -3' miRNA: 3'- uaCuuGCCGa------CCGUGUGGCGGCGcaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 137208 | 0.67 | 0.737194 |
Target: 5'- -cGGugGGC-GGCGCGCCcGgCGCGg- -3' miRNA: 3'- uaCUugCCGaCCGUGUGG-CgGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 133657 | 0.67 | 0.746623 |
Target: 5'- -gGGGCGGUcgccGC-CGCCGCCGCGg- -3' miRNA: 3'- uaCUUGCCGac--CGuGUGGCGGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 133243 | 0.67 | 0.755957 |
Target: 5'- -aGGGCGGC-GGCGCcCCGgUCGCGg- -3' miRNA: 3'- uaCUUGCCGaCCGUGuGGC-GGCGCaa -5' |
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8966 | 5' | -59.6 | NC_002512.2 | + | 126179 | 0.66 | 0.817959 |
Target: 5'- -gGAucAUGGC-GGCGCccccucCCGCCGCGUc -3' miRNA: 3'- uaCU--UGCCGaCCGUGu-----GGCGGCGCAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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