miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 5' -53.8 NC_002512.2 + 108254 0.65 0.989369
Target:  5'- -aUCCAGGACGcggagccGCGAUUCGCcGGg-- -3'
miRNA:   3'- gaAGGUCUUGU-------CGCUAGGCGaCCagc -5'
8968 5' -53.8 NC_002512.2 + 60894 0.66 0.988123
Target:  5'- --gCCGGcGC-GCGA-CCGCUcGGUCGa -3'
miRNA:   3'- gaaGGUCuUGuCGCUaGGCGA-CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 32964 0.66 0.983145
Target:  5'- --gCCGGGagACGuGUGAcgCCGUUGGUCGa -3'
miRNA:   3'- gaaGGUCU--UGU-CGCUa-GGCGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 168588 0.66 0.983145
Target:  5'- -aUCUGGAACAGCug-CgGUUGGUUGg -3'
miRNA:   3'- gaAGGUCUUGUCGcuaGgCGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 204892 0.66 0.983145
Target:  5'- -cUCUcGGACGGCGAgcggUC-CUGGUCGg -3'
miRNA:   3'- gaAGGuCUUGUCGCUa---GGcGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 108709 0.66 0.984954
Target:  5'- --cCCGGAACgggAGCGA-CCaGCUGGUgGu -3'
miRNA:   3'- gaaGGUCUUG---UCGCUaGG-CGACCAgC- -5'
8968 5' -53.8 NC_002512.2 + 100449 0.66 0.986611
Target:  5'- uCUUCCGGGcgACGGCGAagagCGCguucucGGUCGu -3'
miRNA:   3'- -GAAGGUCU--UGUCGCUag--GCGa-----CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 204647 0.66 0.986611
Target:  5'- --aCCGGGACGGCGAcgCGCgggGGaUCGc -3'
miRNA:   3'- gaaGGUCUUGUCGCUagGCGa--CC-AGC- -5'
8968 5' -53.8 NC_002512.2 + 208142 0.66 0.986611
Target:  5'- -gUCCgcAGAucGgAGCGGUCCGCgcGGUCc -3'
miRNA:   3'- gaAGG--UCU--UgUCGCUAGGCGa-CCAGc -5'
8968 5' -53.8 NC_002512.2 + 108110 0.66 0.988123
Target:  5'- -gUCCccgccuCGGCGGUCCGC-GGUCc -3'
miRNA:   3'- gaAGGucuu--GUCGCUAGGCGaCCAGc -5'
8968 5' -53.8 NC_002512.2 + 151876 0.66 0.988123
Target:  5'- -cUCguGGGCgccGGCGAUCCGC-GGaUCGu -3'
miRNA:   3'- gaAGguCUUG---UCGCUAGGCGaCC-AGC- -5'
8968 5' -53.8 NC_002512.2 + 95185 0.66 0.983145
Target:  5'- --cCCAGGAugucgggcagccCGGCGAgcgcCCGCUGGUg- -3'
miRNA:   3'- gaaGGUCUU------------GUCGCUa---GGCGACCAgc -5'
8968 5' -53.8 NC_002512.2 + 15383 0.66 0.986611
Target:  5'- -gUCgAGGuucuCGGCGAUCCGCaGGaggCGg -3'
miRNA:   3'- gaAGgUCUu---GUCGCUAGGCGaCCa--GC- -5'
8968 5' -53.8 NC_002512.2 + 8920 0.66 0.986611
Target:  5'- --gCCAGGGCGGCc-UCgGCcgGGUCGg -3'
miRNA:   3'- gaaGGUCUUGUCGcuAGgCGa-CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 91301 0.66 0.983145
Target:  5'- -cUCCccGGCcGCGAUCCGCagcgUGGUCu -3'
miRNA:   3'- gaAGGucUUGuCGCUAGGCG----ACCAGc -5'
8968 5' -53.8 NC_002512.2 + 122211 0.66 0.984954
Target:  5'- --cCCAGGACGGCucGGUCUGCgccaagaccGGUCu -3'
miRNA:   3'- gaaGGUCUUGUCG--CUAGGCGa--------CCAGc -5'
8968 5' -53.8 NC_002512.2 + 74198 0.66 0.984954
Target:  5'- ---aCAGGGCGGCGAcgUCCGUgGGcUCGc -3'
miRNA:   3'- gaagGUCUUGUCGCU--AGGCGaCC-AGC- -5'
8968 5' -53.8 NC_002512.2 + 15682 0.66 0.984954
Target:  5'- --cCCGGGGCAGCGGg-CGCagcgGGUCc -3'
miRNA:   3'- gaaGGUCUUGUCGCUagGCGa---CCAGc -5'
8968 5' -53.8 NC_002512.2 + 37883 0.66 0.981177
Target:  5'- --gCCAGGACGGUcuUCCGCagcugGGUCc -3'
miRNA:   3'- gaaGGUCUUGUCGcuAGGCGa----CCAGc -5'
8968 5' -53.8 NC_002512.2 + 135354 0.66 0.983145
Target:  5'- --gCUGGAACGGCGGUCCccCUGcGUCu -3'
miRNA:   3'- gaaGGUCUUGUCGCUAGGc-GAC-CAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.