miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 5' -53.8 NC_002512.2 + 7312 0.7 0.899314
Target:  5'- -cUCCGcGACGGCGggCCGCggcgggacGGUCGg -3'
miRNA:   3'- gaAGGUcUUGUCGCuaGGCGa-------CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 8540 0.71 0.872198
Target:  5'- ---aCGGAGCGGCGAggCCGC-GGUCu -3'
miRNA:   3'- gaagGUCUUGUCGCUa-GGCGaCCAGc -5'
8968 5' -53.8 NC_002512.2 + 8847 0.73 0.772467
Target:  5'- -cUCCGGAACAGUGGUgugcaCCGUcGGUCa -3'
miRNA:   3'- gaAGGUCUUGUCGCUA-----GGCGaCCAGc -5'
8968 5' -53.8 NC_002512.2 + 8920 0.66 0.986611
Target:  5'- --gCCAGGGCGGCc-UCgGCcgGGUCGg -3'
miRNA:   3'- gaaGGUCUUGUCGcuAGgCGa-CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 15383 0.66 0.986611
Target:  5'- -gUCgAGGuucuCGGCGAUCCGCaGGaggCGg -3'
miRNA:   3'- gaAGgUCUu---GUCGCUAGGCGaCCa--GC- -5'
8968 5' -53.8 NC_002512.2 + 15682 0.66 0.984954
Target:  5'- --cCCGGGGCAGCGGg-CGCagcgGGUCc -3'
miRNA:   3'- gaaGGUCUUGUCGCUagGCGa---CCAGc -5'
8968 5' -53.8 NC_002512.2 + 21158 0.69 0.938055
Target:  5'- -cUCCGGucgGCGGCGcUCCcgauCUGGUCGg -3'
miRNA:   3'- gaAGGUCu--UGUCGCuAGGc---GACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 32964 0.66 0.983145
Target:  5'- --gCCGGGagACGuGUGAcgCCGUUGGUCGa -3'
miRNA:   3'- gaaGGUCU--UGU-CGCUa-GGCGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 35976 0.68 0.955128
Target:  5'- -gUCCGGGAC-GCGAUCCGCcgaccgcGG-CGa -3'
miRNA:   3'- gaAGGUCUUGuCGCUAGGCGa------CCaGC- -5'
8968 5' -53.8 NC_002512.2 + 37883 0.66 0.981177
Target:  5'- --gCCAGGACGGUcuUCCGCagcugGGUCc -3'
miRNA:   3'- gaaGGUCUUGUCGcuAGGCGa----CCAGc -5'
8968 5' -53.8 NC_002512.2 + 38341 0.7 0.892864
Target:  5'- ---aCGGAucGCGGgGAUCCGCcgGGUCGc -3'
miRNA:   3'- gaagGUCU--UGUCgCUAGGCGa-CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 39982 0.72 0.832839
Target:  5'- gUUCCAGcGACAGCGAucuugggUCCGacucgGGUCGu -3'
miRNA:   3'- gAAGGUC-UUGUCGCU-------AGGCga---CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 56194 0.68 0.966867
Target:  5'- --cCCAGGACGGCGGUgacgaacuguuugcgCCGCUcGUCc -3'
miRNA:   3'- gaaGGUCUUGUCGCUA---------------GGCGAcCAGc -5'
8968 5' -53.8 NC_002512.2 + 60894 0.66 0.988123
Target:  5'- --gCCGGcGC-GCGA-CCGCUcGGUCGa -3'
miRNA:   3'- gaaGGUCuUGuCGCUaGGCGA-CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 64347 0.67 0.971562
Target:  5'- -gUCCAGcucgauGACGGCGGU--GCUGGUCu -3'
miRNA:   3'- gaAGGUC------UUGUCGCUAggCGACCAGc -5'
8968 5' -53.8 NC_002512.2 + 64628 0.72 0.825389
Target:  5'- -gUCCGGGGCuccGCGAcgcgUCCGCgaGGUCGu -3'
miRNA:   3'- gaAGGUCUUGu--CGCU----AGGCGa-CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 66570 0.69 0.933215
Target:  5'- --gCCAGAAUA-CGAggagaccgCCGCUGGUCu -3'
miRNA:   3'- gaaGGUCUUGUcGCUa-------GGCGACCAGc -5'
8968 5' -53.8 NC_002512.2 + 74198 0.66 0.984954
Target:  5'- ---aCAGGGCGGCGAcgUCCGUgGGcUCGc -3'
miRNA:   3'- gaagGUCUUGUCGCU--AGGCGaCC-AGC- -5'
8968 5' -53.8 NC_002512.2 + 81195 0.67 0.967482
Target:  5'- -aUCCGGGcgaagGCGGCGAcgagggccacggcCCGCUGGaUCGg -3'
miRNA:   3'- gaAGGUCU-----UGUCGCUa------------GGCGACC-AGC- -5'
8968 5' -53.8 NC_002512.2 + 83101 0.73 0.753762
Target:  5'- -cUCCGGGucCGGCGGUCCGgCgucGGUCGg -3'
miRNA:   3'- gaAGGUCUu-GUCGCUAGGC-Ga--CCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.