miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 5' -53.8 NC_002512.2 + 226792 0.68 0.965612
Target:  5'- uUUCCAGGGCGGagaaGAUCUcgucgGCggacgGGUCGu -3'
miRNA:   3'- gAAGGUCUUGUCg---CUAGG-----CGa----CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 225399 0.68 0.965612
Target:  5'- uCUUCgGGGACGGCG--CCGg-GGUCGg -3'
miRNA:   3'- -GAAGgUCUUGUCGCuaGGCgaCCAGC- -5'
8968 5' -53.8 NC_002512.2 + 223108 0.71 0.857369
Target:  5'- --aCgGGGAgGGgGAUCCGCgGGUCGa -3'
miRNA:   3'- gaaGgUCUUgUCgCUAGGCGaCCAGC- -5'
8968 5' -53.8 NC_002512.2 + 219385 0.69 0.928143
Target:  5'- --cCCuGGGCuGCc-UCCGCUGGUCGg -3'
miRNA:   3'- gaaGGuCUUGuCGcuAGGCGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 215124 0.68 0.958837
Target:  5'- --gCCAGAACGGCcggGGUCCGCgcgacggGGgaggCGa -3'
miRNA:   3'- gaaGGUCUUGUCG---CUAGGCGa------CCa---GC- -5'
8968 5' -53.8 NC_002512.2 + 208142 0.66 0.986611
Target:  5'- -gUCCgcAGAucGgAGCGGUCCGCgcGGUCc -3'
miRNA:   3'- gaAGG--UCU--UgUCGCUAGGCGa-CCAGc -5'
8968 5' -53.8 NC_002512.2 + 204892 0.66 0.983145
Target:  5'- -cUCUcGGACGGCGAgcggUC-CUGGUCGg -3'
miRNA:   3'- gaAGGuCUUGUCGCUa---GGcGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 204647 0.66 0.986611
Target:  5'- --aCCGGGACGGCGAcgCGCgggGGaUCGc -3'
miRNA:   3'- gaaGGUCUUGUCGCUagGCGa--CC-AGC- -5'
8968 5' -53.8 NC_002512.2 + 204300 1.09 0.007222
Target:  5'- aCUUCCAGAACAGCGAUCCGCUGGUCGu -3'
miRNA:   3'- -GAAGGUCUUGUCGCUAGGCGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 196143 0.67 0.979042
Target:  5'- aCUUCCAGGGCcGCuccUCGCUccGGUCGa -3'
miRNA:   3'- -GAAGGUCUUGuCGcuaGGCGA--CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 194158 0.67 0.976732
Target:  5'- -aUCCuGAuCuGCGA-CCGCUGGUaCGa -3'
miRNA:   3'- gaAGGuCUuGuCGCUaGGCGACCA-GC- -5'
8968 5' -53.8 NC_002512.2 + 194030 0.67 0.976732
Target:  5'- --aCCGGGAguCGGCGAUCCaggccgccugGCUGGUg- -3'
miRNA:   3'- gaaGGUCUU--GUCGCUAGG----------CGACCAgc -5'
8968 5' -53.8 NC_002512.2 + 191653 0.66 0.983145
Target:  5'- --gCCAGGACGGCGGagacgUCCGCgucccgGGgcugggCGa -3'
miRNA:   3'- gaaGGUCUUGUCGCU-----AGGCGa-----CCa-----GC- -5'
8968 5' -53.8 NC_002512.2 + 190224 0.68 0.951198
Target:  5'- -gUCCGGGACGGCcacGUCUGCUGcgacGUCa -3'
miRNA:   3'- gaAGGUCUUGUCGc--UAGGCGAC----CAGc -5'
8968 5' -53.8 NC_002512.2 + 184674 0.66 0.982765
Target:  5'- -aUCCGGucgGCGGCcGUCCGCgccgccggucccGGUCGa -3'
miRNA:   3'- gaAGGUCu--UGUCGcUAGGCGa-----------CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 184023 0.71 0.857369
Target:  5'- gUUCUAcgucGACcuCGGUCCGCUGGUCGa -3'
miRNA:   3'- gAAGGUc---UUGucGCUAGGCGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 168588 0.66 0.983145
Target:  5'- -aUCUGGAACAGCug-CgGUUGGUUGg -3'
miRNA:   3'- gaAGGUCUUGUCGcuaGgCGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 166476 0.71 0.857369
Target:  5'- --gCgGGGACGGCGGgaCCGCgGGUCGg -3'
miRNA:   3'- gaaGgUCUUGUCGCUa-GGCGaCCAGC- -5'
8968 5' -53.8 NC_002512.2 + 161846 0.71 0.886192
Target:  5'- gCUUCCGGAcacggcguCGGCGGUCCuCccgGGUCGg -3'
miRNA:   3'- -GAAGGUCUu-------GUCGCUAGGcGa--CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 158991 0.72 0.808347
Target:  5'- gCUUCCAGAA-GGUuuguUCCGUUGGUCGa -3'
miRNA:   3'- -GAAGGUCUUgUCGcu--AGGCGACCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.