miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 5' -53.8 NC_002512.2 + 99524 0.73 0.772467
Target:  5'- -cUCCGagacGGugAGCGGUCCGCccggGGUCGu -3'
miRNA:   3'- gaAGGU----CUugUCGCUAGGCGa---CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 56194 0.68 0.966867
Target:  5'- --cCCAGGACGGCGGUgacgaacuguuugcgCCGCUcGUCc -3'
miRNA:   3'- gaaGGUCUUGUCGCUA---------------GGCGAcCAGc -5'
8968 5' -53.8 NC_002512.2 + 226792 0.68 0.965612
Target:  5'- uUUCCAGGGCGGagaaGAUCUcgucgGCggacgGGUCGu -3'
miRNA:   3'- gAAGGUCUUGUCg---CUAGG-----CGa----CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 121943 0.68 0.96233
Target:  5'- --cCCGGAcccGCGGCGAugaugUUCGCUcacGGUCGg -3'
miRNA:   3'- gaaGGUCU---UGUCGCU-----AGGCGA---CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 35976 0.68 0.955128
Target:  5'- -gUCCGGGAC-GCGAUCCGCcgaccgcGG-CGa -3'
miRNA:   3'- gaAGGUCUUGuCGCUAGGCGa------CCaGC- -5'
8968 5' -53.8 NC_002512.2 + 113197 0.68 0.947044
Target:  5'- gUUCCAGAGCGGCGucggCCaGCggcucgcGGUCc -3'
miRNA:   3'- gAAGGUCUUGUCGCua--GG-CGa------CCAGc -5'
8968 5' -53.8 NC_002512.2 + 21158 0.69 0.938055
Target:  5'- -cUCCGGucgGCGGCGcUCCcgauCUGGUCGg -3'
miRNA:   3'- gaAGGUCu--UGUCGCuAGGc---GACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 66570 0.69 0.933215
Target:  5'- --gCCAGAAUA-CGAggagaccgCCGCUGGUCu -3'
miRNA:   3'- gaaGGUCUUGUcGCUa-------GGCGACCAGc -5'
8968 5' -53.8 NC_002512.2 + 156181 0.69 0.922839
Target:  5'- ----gGGAGCguGGCGAUCC-CUGGUCGu -3'
miRNA:   3'- gaaggUCUUG--UCGCUAGGcGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 85528 0.69 0.922296
Target:  5'- ---aCAGGACGGCGGUCaugacggCGCUGG-CGg -3'
miRNA:   3'- gaagGUCUUGUCGCUAG-------GCGACCaGC- -5'
8968 5' -53.8 NC_002512.2 + 7312 0.7 0.899314
Target:  5'- -cUCCGcGACGGCGggCCGCggcgggacGGUCGg -3'
miRNA:   3'- gaAGGUcUUGUCGCuaGGCGa-------CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 131730 0.7 0.892864
Target:  5'- -gUCCAGAcGCGGCGA-CCGCcGGggCGg -3'
miRNA:   3'- gaAGGUCU-UGUCGCUaGGCGaCCa-GC- -5'
8968 5' -53.8 NC_002512.2 + 38341 0.7 0.892864
Target:  5'- ---aCGGAucGCGGgGAUCCGCcgGGUCGc -3'
miRNA:   3'- gaagGUCU--UGUCgCUAGGCGa-CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 152286 0.71 0.879302
Target:  5'- gUUCCG--GCGGCGAUCCGCgagGGaccgcUCGg -3'
miRNA:   3'- gAAGGUcuUGUCGCUAGGCGa--CC-----AGC- -5'
8968 5' -53.8 NC_002512.2 + 8540 0.71 0.872198
Target:  5'- ---aCGGAGCGGCGAggCCGC-GGUCu -3'
miRNA:   3'- gaagGUCUUGUCGCUa-GGCGaCCAGc -5'
8968 5' -53.8 NC_002512.2 + 113126 0.71 0.857369
Target:  5'- -gUCCAcGAACAGCGGcUCgGCcUGGUCc -3'
miRNA:   3'- gaAGGU-CUUGUCGCU-AGgCG-ACCAGc -5'
8968 5' -53.8 NC_002512.2 + 134573 0.71 0.849655
Target:  5'- gUUCCGGuACGGCGGcCCGC-GGUCc -3'
miRNA:   3'- gAAGGUCuUGUCGCUaGGCGaCCAGc -5'
8968 5' -53.8 NC_002512.2 + 64628 0.72 0.825389
Target:  5'- -gUCCGGGGCuccGCGAcgcgUCCGCgaGGUCGu -3'
miRNA:   3'- gaAGGUCUUGu--CGCU----AGGCGa-CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 158991 0.72 0.808347
Target:  5'- gCUUCCAGAA-GGUuuguUCCGUUGGUCGa -3'
miRNA:   3'- -GAAGGUCUUgUCGcu--AGGCGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 83101 0.73 0.753762
Target:  5'- -cUCCGGGucCGGCGGUCCGgCgucGGUCGg -3'
miRNA:   3'- gaAGGUCUu-GUCGCUAGGC-Ga--CCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.