Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8968 | 5' | -53.8 | NC_002512.2 | + | 158991 | 0.72 | 0.808347 |
Target: 5'- gCUUCCAGAA-GGUuuguUCCGUUGGUCGa -3' miRNA: 3'- -GAAGGUCUUgUCGcu--AGGCGACCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 64628 | 0.72 | 0.825389 |
Target: 5'- -gUCCGGGGCuccGCGAcgcgUCCGCgaGGUCGu -3' miRNA: 3'- gaAGGUCUUGu--CGCU----AGGCGa-CCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 134573 | 0.71 | 0.849655 |
Target: 5'- gUUCCGGuACGGCGGcCCGC-GGUCc -3' miRNA: 3'- gAAGGUCuUGUCGCUaGGCGaCCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 113126 | 0.71 | 0.857369 |
Target: 5'- -gUCCAcGAACAGCGGcUCgGCcUGGUCc -3' miRNA: 3'- gaAGGU-CUUGUCGCU-AGgCG-ACCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 8540 | 0.71 | 0.872198 |
Target: 5'- ---aCGGAGCGGCGAggCCGC-GGUCu -3' miRNA: 3'- gaagGUCUUGUCGCUa-GGCGaCCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 152286 | 0.71 | 0.879302 |
Target: 5'- gUUCCG--GCGGCGAUCCGCgagGGaccgcUCGg -3' miRNA: 3'- gAAGGUcuUGUCGCUAGGCGa--CC-----AGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 38341 | 0.7 | 0.892864 |
Target: 5'- ---aCGGAucGCGGgGAUCCGCcgGGUCGc -3' miRNA: 3'- gaagGUCU--UGUCgCUAGGCGa-CCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 21158 | 0.69 | 0.938055 |
Target: 5'- -cUCCGGucgGCGGCGcUCCcgauCUGGUCGg -3' miRNA: 3'- gaAGGUCu--UGUCGCuAGGc---GACCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 66570 | 0.69 | 0.933215 |
Target: 5'- --gCCAGAAUA-CGAggagaccgCCGCUGGUCu -3' miRNA: 3'- gaaGGUCUUGUcGCUa-------GGCGACCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 156181 | 0.69 | 0.922839 |
Target: 5'- ----gGGAGCguGGCGAUCC-CUGGUCGu -3' miRNA: 3'- gaaggUCUUG--UCGCUAGGcGACCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 85528 | 0.69 | 0.922296 |
Target: 5'- ---aCAGGACGGCGGUCaugacggCGCUGG-CGg -3' miRNA: 3'- gaagGUCUUGUCGCUAG-------GCGACCaGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 7312 | 0.7 | 0.899314 |
Target: 5'- -cUCCGcGACGGCGggCCGCggcgggacGGUCGg -3' miRNA: 3'- gaAGGUcUUGUCGCuaGGCGa-------CCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 131730 | 0.7 | 0.892864 |
Target: 5'- -gUCCAGAcGCGGCGA-CCGCcGGggCGg -3' miRNA: 3'- gaAGGUCU-UGUCGCUaGGCGaCCa-GC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 204892 | 0.66 | 0.983145 |
Target: 5'- -cUCUcGGACGGCGAgcggUC-CUGGUCGg -3' miRNA: 3'- gaAGGuCUUGUCGCUa---GGcGACCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 108709 | 0.66 | 0.984954 |
Target: 5'- --cCCGGAACgggAGCGA-CCaGCUGGUgGu -3' miRNA: 3'- gaaGGUCUUG---UCGCUaGG-CGACCAgC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 100449 | 0.66 | 0.986611 |
Target: 5'- uCUUCCGGGcgACGGCGAagagCGCguucucGGUCGu -3' miRNA: 3'- -GAAGGUCU--UGUCGCUag--GCGa-----CCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 204647 | 0.66 | 0.986611 |
Target: 5'- --aCCGGGACGGCGAcgCGCgggGGaUCGc -3' miRNA: 3'- gaaGGUCUUGUCGCUagGCGa--CC-AGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 208142 | 0.66 | 0.986611 |
Target: 5'- -gUCCgcAGAucGgAGCGGUCCGCgcGGUCc -3' miRNA: 3'- gaAGG--UCU--UgUCGCUAGGCGa-CCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 108110 | 0.66 | 0.988123 |
Target: 5'- -gUCCccgccuCGGCGGUCCGC-GGUCc -3' miRNA: 3'- gaAGGucuu--GUCGCUAGGCGaCCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 204300 | 1.09 | 0.007222 |
Target: 5'- aCUUCCAGAACAGCGAUCCGCUGGUCGu -3' miRNA: 3'- -GAAGGUCUUGUCGCUAGGCGACCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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