miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 5' -53.8 NC_002512.2 + 85528 0.69 0.922296
Target:  5'- ---aCAGGACGGCGGUCaugacggCGCUGG-CGg -3'
miRNA:   3'- gaagGUCUUGUCGCUAG-------GCGACCaGC- -5'
8968 5' -53.8 NC_002512.2 + 91301 0.66 0.983145
Target:  5'- -cUCCccGGCcGCGAUCCGCagcgUGGUCu -3'
miRNA:   3'- gaAGGucUUGuCGCUAGGCG----ACCAGc -5'
8968 5' -53.8 NC_002512.2 + 92588 0.68 0.965612
Target:  5'- --gCCGGGagggGCGGCGGUCCcgagGCcGGUCGc -3'
miRNA:   3'- gaaGGUCU----UGUCGCUAGG----CGaCCAGC- -5'
8968 5' -53.8 NC_002512.2 + 95185 0.66 0.983145
Target:  5'- --cCCAGGAugucgggcagccCGGCGAgcgcCCGCUGGUg- -3'
miRNA:   3'- gaaGGUCUU------------GUCGCUa---GGCGACCAgc -5'
8968 5' -53.8 NC_002512.2 + 96195 0.69 0.928143
Target:  5'- -gUCCGGGA-GGCGG-CCGCgaGGUCGg -3'
miRNA:   3'- gaAGGUCUUgUCGCUaGGCGa-CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 99524 0.73 0.772467
Target:  5'- -cUCCGagacGGugAGCGGUCCGCccggGGUCGu -3'
miRNA:   3'- gaAGGU----CUugUCGCUAGGCGa---CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 100449 0.66 0.986611
Target:  5'- uCUUCCGGGcgACGGCGAagagCGCguucucGGUCGu -3'
miRNA:   3'- -GAAGGUCU--UGUCGCUag--GCGa-----CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 108110 0.66 0.988123
Target:  5'- -gUCCccgccuCGGCGGUCCGC-GGUCc -3'
miRNA:   3'- gaAGGucuu--GUCGCUAGGCGaCCAGc -5'
8968 5' -53.8 NC_002512.2 + 108254 0.65 0.989369
Target:  5'- -aUCCAGGACGcggagccGCGAUUCGCcGGg-- -3'
miRNA:   3'- gaAGGUCUUGU-------CGCUAGGCGaCCagc -5'
8968 5' -53.8 NC_002512.2 + 108317 0.67 0.979042
Target:  5'- -gUCCAuGGCGGCGcgCgGCgggcGGUCGg -3'
miRNA:   3'- gaAGGUcUUGUCGCuaGgCGa---CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 108709 0.66 0.984954
Target:  5'- --cCCGGAACgggAGCGA-CCaGCUGGUgGu -3'
miRNA:   3'- gaaGGUCUUG---UCGCUaGG-CGACCAgC- -5'
8968 5' -53.8 NC_002512.2 + 112062 0.67 0.972657
Target:  5'- -gUCCAGGACGuCGGUCCGCcgcgagcccgucgccUGG-CGg -3'
miRNA:   3'- gaAGGUCUUGUcGCUAGGCG---------------ACCaGC- -5'
8968 5' -53.8 NC_002512.2 + 113126 0.71 0.857369
Target:  5'- -gUCCAcGAACAGCGGcUCgGCcUGGUCc -3'
miRNA:   3'- gaAGGU-CUUGUCGCU-AGgCG-ACCAGc -5'
8968 5' -53.8 NC_002512.2 + 113197 0.68 0.947044
Target:  5'- gUUCCAGAGCGGCGucggCCaGCggcucgcGGUCc -3'
miRNA:   3'- gAAGGUCUUGUCGCua--GG-CGa------CCAGc -5'
8968 5' -53.8 NC_002512.2 + 113720 0.68 0.955128
Target:  5'- -gUCCcgacgcGGGCGGCGAUCUGCgGGcCGa -3'
miRNA:   3'- gaAGGu-----CUUGUCGCUAGGCGaCCaGC- -5'
8968 5' -53.8 NC_002512.2 + 117316 0.69 0.938055
Target:  5'- --aCCGGAcggACGGCGGguucCCGCUGG-CGc -3'
miRNA:   3'- gaaGGUCU---UGUCGCUa---GGCGACCaGC- -5'
8968 5' -53.8 NC_002512.2 + 121943 0.68 0.96233
Target:  5'- --cCCGGAcccGCGGCGAugaugUUCGCUcacGGUCGg -3'
miRNA:   3'- gaaGGUCU---UGUCGCU-----AGGCGA---CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 122211 0.66 0.984954
Target:  5'- --cCCAGGACGGCucGGUCUGCgccaagaccGGUCu -3'
miRNA:   3'- gaaGGUCUUGUCG--CUAGGCGa--------CCAGc -5'
8968 5' -53.8 NC_002512.2 + 127482 0.71 0.879302
Target:  5'- -gUCCGGAcGCGGCGAcgUCgGCUGGaaccUCGg -3'
miRNA:   3'- gaAGGUCU-UGUCGCU--AGgCGACC----AGC- -5'
8968 5' -53.8 NC_002512.2 + 131730 0.7 0.892864
Target:  5'- -gUCCAGAcGCGGCGA-CCGCcGGggCGg -3'
miRNA:   3'- gaAGGUCU-UGUCGCUaGGCGaCCa-GC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.