Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8968 | 5' | -53.8 | NC_002512.2 | + | 85528 | 0.69 | 0.922296 |
Target: 5'- ---aCAGGACGGCGGUCaugacggCGCUGG-CGg -3' miRNA: 3'- gaagGUCUUGUCGCUAG-------GCGACCaGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 91301 | 0.66 | 0.983145 |
Target: 5'- -cUCCccGGCcGCGAUCCGCagcgUGGUCu -3' miRNA: 3'- gaAGGucUUGuCGCUAGGCG----ACCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 92588 | 0.68 | 0.965612 |
Target: 5'- --gCCGGGagggGCGGCGGUCCcgagGCcGGUCGc -3' miRNA: 3'- gaaGGUCU----UGUCGCUAGG----CGaCCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 95185 | 0.66 | 0.983145 |
Target: 5'- --cCCAGGAugucgggcagccCGGCGAgcgcCCGCUGGUg- -3' miRNA: 3'- gaaGGUCUU------------GUCGCUa---GGCGACCAgc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 96195 | 0.69 | 0.928143 |
Target: 5'- -gUCCGGGA-GGCGG-CCGCgaGGUCGg -3' miRNA: 3'- gaAGGUCUUgUCGCUaGGCGa-CCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 99524 | 0.73 | 0.772467 |
Target: 5'- -cUCCGagacGGugAGCGGUCCGCccggGGUCGu -3' miRNA: 3'- gaAGGU----CUugUCGCUAGGCGa---CCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 100449 | 0.66 | 0.986611 |
Target: 5'- uCUUCCGGGcgACGGCGAagagCGCguucucGGUCGu -3' miRNA: 3'- -GAAGGUCU--UGUCGCUag--GCGa-----CCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 108110 | 0.66 | 0.988123 |
Target: 5'- -gUCCccgccuCGGCGGUCCGC-GGUCc -3' miRNA: 3'- gaAGGucuu--GUCGCUAGGCGaCCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 108254 | 0.65 | 0.989369 |
Target: 5'- -aUCCAGGACGcggagccGCGAUUCGCcGGg-- -3' miRNA: 3'- gaAGGUCUUGU-------CGCUAGGCGaCCagc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 108317 | 0.67 | 0.979042 |
Target: 5'- -gUCCAuGGCGGCGcgCgGCgggcGGUCGg -3' miRNA: 3'- gaAGGUcUUGUCGCuaGgCGa---CCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 108709 | 0.66 | 0.984954 |
Target: 5'- --cCCGGAACgggAGCGA-CCaGCUGGUgGu -3' miRNA: 3'- gaaGGUCUUG---UCGCUaGG-CGACCAgC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 112062 | 0.67 | 0.972657 |
Target: 5'- -gUCCAGGACGuCGGUCCGCcgcgagcccgucgccUGG-CGg -3' miRNA: 3'- gaAGGUCUUGUcGCUAGGCG---------------ACCaGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 113126 | 0.71 | 0.857369 |
Target: 5'- -gUCCAcGAACAGCGGcUCgGCcUGGUCc -3' miRNA: 3'- gaAGGU-CUUGUCGCU-AGgCG-ACCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 113197 | 0.68 | 0.947044 |
Target: 5'- gUUCCAGAGCGGCGucggCCaGCggcucgcGGUCc -3' miRNA: 3'- gAAGGUCUUGUCGCua--GG-CGa------CCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 113720 | 0.68 | 0.955128 |
Target: 5'- -gUCCcgacgcGGGCGGCGAUCUGCgGGcCGa -3' miRNA: 3'- gaAGGu-----CUUGUCGCUAGGCGaCCaGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 117316 | 0.69 | 0.938055 |
Target: 5'- --aCCGGAcggACGGCGGguucCCGCUGG-CGc -3' miRNA: 3'- gaaGGUCU---UGUCGCUa---GGCGACCaGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 121943 | 0.68 | 0.96233 |
Target: 5'- --cCCGGAcccGCGGCGAugaugUUCGCUcacGGUCGg -3' miRNA: 3'- gaaGGUCU---UGUCGCU-----AGGCGA---CCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 122211 | 0.66 | 0.984954 |
Target: 5'- --cCCAGGACGGCucGGUCUGCgccaagaccGGUCu -3' miRNA: 3'- gaaGGUCUUGUCG--CUAGGCGa--------CCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 127482 | 0.71 | 0.879302 |
Target: 5'- -gUCCGGAcGCGGCGAcgUCgGCUGGaaccUCGg -3' miRNA: 3'- gaAGGUCU-UGUCGCU--AGgCGACC----AGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 131730 | 0.7 | 0.892864 |
Target: 5'- -gUCCAGAcGCGGCGA-CCGCcGGggCGg -3' miRNA: 3'- gaAGGUCU-UGUCGCUaGGCGaCCa-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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