Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8968 | 5' | -53.8 | NC_002512.2 | + | 85528 | 0.69 | 0.922296 |
Target: 5'- ---aCAGGACGGCGGUCaugacggCGCUGG-CGg -3' miRNA: 3'- gaagGUCUUGUCGCUAG-------GCGACCaGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 156181 | 0.69 | 0.922839 |
Target: 5'- ----gGGAGCguGGCGAUCC-CUGGUCGu -3' miRNA: 3'- gaaggUCUUG--UCGCUAGGcGACCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 219385 | 0.69 | 0.928143 |
Target: 5'- --cCCuGGGCuGCc-UCCGCUGGUCGg -3' miRNA: 3'- gaaGGuCUUGuCGcuAGGCGACCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 96195 | 0.69 | 0.928143 |
Target: 5'- -gUCCGGGA-GGCGG-CCGCgaGGUCGg -3' miRNA: 3'- gaAGGUCUUgUCGCUaGGCGa-CCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 66570 | 0.69 | 0.933215 |
Target: 5'- --gCCAGAAUA-CGAggagaccgCCGCUGGUCu -3' miRNA: 3'- gaaGGUCUUGUcGCUa-------GGCGACCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 117316 | 0.69 | 0.938055 |
Target: 5'- --aCCGGAcggACGGCGGguucCCGCUGG-CGc -3' miRNA: 3'- gaaGGUCU---UGUCGCUa---GGCGACCaGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 21158 | 0.69 | 0.938055 |
Target: 5'- -cUCCGGucgGCGGCGcUCCcgauCUGGUCGg -3' miRNA: 3'- gaAGGUCu--UGUCGCuAGGc---GACCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 113197 | 0.68 | 0.947044 |
Target: 5'- gUUCCAGAGCGGCGucggCCaGCggcucgcGGUCc -3' miRNA: 3'- gAAGGUCUUGUCGCua--GG-CGa------CCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 190224 | 0.68 | 0.951198 |
Target: 5'- -gUCCGGGACGGCcacGUCUGCUGcgacGUCa -3' miRNA: 3'- gaAGGUCUUGUCGc--UAGGCGAC----CAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 113720 | 0.68 | 0.955128 |
Target: 5'- -gUCCcgacgcGGGCGGCGAUCUGCgGGcCGa -3' miRNA: 3'- gaAGGu-----CUUGUCGCUAGGCGaCCaGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 35976 | 0.68 | 0.955128 |
Target: 5'- -gUCCGGGAC-GCGAUCCGCcgaccgcGG-CGa -3' miRNA: 3'- gaAGGUCUUGuCGCUAGGCGa------CCaGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 215124 | 0.68 | 0.958837 |
Target: 5'- --gCCAGAACGGCcggGGUCCGCgcgacggGGgaggCGa -3' miRNA: 3'- gaaGGUCUUGUCG---CUAGGCGa------CCa---GC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 143760 | 0.68 | 0.96233 |
Target: 5'- gCUUCCAGGuCcGCGAccuccUCCGCgcccgGGUCc -3' miRNA: 3'- -GAAGGUCUuGuCGCU-----AGGCGa----CCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 145685 | 0.68 | 0.96233 |
Target: 5'- -gUCCGcGGACgAGUGGcugcgCCGCUGGUCc -3' miRNA: 3'- gaAGGU-CUUG-UCGCUa----GGCGACCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 121943 | 0.68 | 0.96233 |
Target: 5'- --cCCGGAcccGCGGCGAugaugUUCGCUcacGGUCGg -3' miRNA: 3'- gaaGGUCU---UGUCGCU-----AGGCGA---CCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 225399 | 0.68 | 0.965612 |
Target: 5'- uCUUCgGGGACGGCG--CCGg-GGUCGg -3' miRNA: 3'- -GAAGgUCUUGUCGCuaGGCgaCCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 226792 | 0.68 | 0.965612 |
Target: 5'- uUUCCAGGGCGGagaaGAUCUcgucgGCggacgGGUCGu -3' miRNA: 3'- gAAGGUCUUGUCg---CUAGG-----CGa----CCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 92588 | 0.68 | 0.965612 |
Target: 5'- --gCCGGGagggGCGGCGGUCCcgagGCcGGUCGc -3' miRNA: 3'- gaaGGUCU----UGUCGCUAGG----CGaCCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 56194 | 0.68 | 0.966867 |
Target: 5'- --cCCAGGACGGCGGUgacgaacuguuugcgCCGCUcGUCc -3' miRNA: 3'- gaaGGUCUUGUCGCUA---------------GGCGAcCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 81195 | 0.67 | 0.967482 |
Target: 5'- -aUCCGGGcgaagGCGGCGAcgagggccacggcCCGCUGGaUCGg -3' miRNA: 3'- gaAGGUCU-----UGUCGCUa------------GGCGACC-AGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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