miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 5' -53.8 NC_002512.2 + 85528 0.69 0.922296
Target:  5'- ---aCAGGACGGCGGUCaugacggCGCUGG-CGg -3'
miRNA:   3'- gaagGUCUUGUCGCUAG-------GCGACCaGC- -5'
8968 5' -53.8 NC_002512.2 + 156181 0.69 0.922839
Target:  5'- ----gGGAGCguGGCGAUCC-CUGGUCGu -3'
miRNA:   3'- gaaggUCUUG--UCGCUAGGcGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 96195 0.69 0.928143
Target:  5'- -gUCCGGGA-GGCGG-CCGCgaGGUCGg -3'
miRNA:   3'- gaAGGUCUUgUCGCUaGGCGa-CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 219385 0.69 0.928143
Target:  5'- --cCCuGGGCuGCc-UCCGCUGGUCGg -3'
miRNA:   3'- gaaGGuCUUGuCGcuAGGCGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 66570 0.69 0.933215
Target:  5'- --gCCAGAAUA-CGAggagaccgCCGCUGGUCu -3'
miRNA:   3'- gaaGGUCUUGUcGCUa-------GGCGACCAGc -5'
8968 5' -53.8 NC_002512.2 + 21158 0.69 0.938055
Target:  5'- -cUCCGGucgGCGGCGcUCCcgauCUGGUCGg -3'
miRNA:   3'- gaAGGUCu--UGUCGCuAGGc---GACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 117316 0.69 0.938055
Target:  5'- --aCCGGAcggACGGCGGguucCCGCUGG-CGc -3'
miRNA:   3'- gaaGGUCU---UGUCGCUa---GGCGACCaGC- -5'
8968 5' -53.8 NC_002512.2 + 113197 0.68 0.947044
Target:  5'- gUUCCAGAGCGGCGucggCCaGCggcucgcGGUCc -3'
miRNA:   3'- gAAGGUCUUGUCGCua--GG-CGa------CCAGc -5'
8968 5' -53.8 NC_002512.2 + 190224 0.68 0.951198
Target:  5'- -gUCCGGGACGGCcacGUCUGCUGcgacGUCa -3'
miRNA:   3'- gaAGGUCUUGUCGc--UAGGCGAC----CAGc -5'
8968 5' -53.8 NC_002512.2 + 35976 0.68 0.955128
Target:  5'- -gUCCGGGAC-GCGAUCCGCcgaccgcGG-CGa -3'
miRNA:   3'- gaAGGUCUUGuCGCUAGGCGa------CCaGC- -5'
8968 5' -53.8 NC_002512.2 + 113720 0.68 0.955128
Target:  5'- -gUCCcgacgcGGGCGGCGAUCUGCgGGcCGa -3'
miRNA:   3'- gaAGGu-----CUUGUCGCUAGGCGaCCaGC- -5'
8968 5' -53.8 NC_002512.2 + 215124 0.68 0.958837
Target:  5'- --gCCAGAACGGCcggGGUCCGCgcgacggGGgaggCGa -3'
miRNA:   3'- gaaGGUCUUGUCG---CUAGGCGa------CCa---GC- -5'
8968 5' -53.8 NC_002512.2 + 121943 0.68 0.96233
Target:  5'- --cCCGGAcccGCGGCGAugaugUUCGCUcacGGUCGg -3'
miRNA:   3'- gaaGGUCU---UGUCGCU-----AGGCGA---CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 143760 0.68 0.96233
Target:  5'- gCUUCCAGGuCcGCGAccuccUCCGCgcccgGGUCc -3'
miRNA:   3'- -GAAGGUCUuGuCGCU-----AGGCGa----CCAGc -5'
8968 5' -53.8 NC_002512.2 + 145685 0.68 0.96233
Target:  5'- -gUCCGcGGACgAGUGGcugcgCCGCUGGUCc -3'
miRNA:   3'- gaAGGU-CUUG-UCGCUa----GGCGACCAGc -5'
8968 5' -53.8 NC_002512.2 + 92588 0.68 0.965612
Target:  5'- --gCCGGGagggGCGGCGGUCCcgagGCcGGUCGc -3'
miRNA:   3'- gaaGGUCU----UGUCGCUAGG----CGaCCAGC- -5'
8968 5' -53.8 NC_002512.2 + 226792 0.68 0.965612
Target:  5'- uUUCCAGGGCGGagaaGAUCUcgucgGCggacgGGUCGu -3'
miRNA:   3'- gAAGGUCUUGUCg---CUAGG-----CGa----CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 225399 0.68 0.965612
Target:  5'- uCUUCgGGGACGGCG--CCGg-GGUCGg -3'
miRNA:   3'- -GAAGgUCUUGUCGCuaGGCgaCCAGC- -5'
8968 5' -53.8 NC_002512.2 + 56194 0.68 0.966867
Target:  5'- --cCCAGGACGGCGGUgacgaacuguuugcgCCGCUcGUCc -3'
miRNA:   3'- gaaGGUCUUGUCGCUA---------------GGCGAcCAGc -5'
8968 5' -53.8 NC_002512.2 + 81195 0.67 0.967482
Target:  5'- -aUCCGGGcgaagGCGGCGAcgagggccacggcCCGCUGGaUCGg -3'
miRNA:   3'- gaAGGUCU-----UGUCGCUa------------GGCGACC-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.