miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 5' -53.8 NC_002512.2 + 184674 0.66 0.982765
Target:  5'- -aUCCGGucgGCGGCcGUCCGCgccgccggucccGGUCGa -3'
miRNA:   3'- gaAGGUCu--UGUCGcUAGGCGa-----------CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 37883 0.66 0.981177
Target:  5'- --gCCAGGACGGUcuUCCGCagcugGGUCc -3'
miRNA:   3'- gaaGGUCUUGUCGcuAGGCGa----CCAGc -5'
8968 5' -53.8 NC_002512.2 + 108317 0.67 0.979042
Target:  5'- -gUCCAuGGCGGCGcgCgGCgggcGGUCGg -3'
miRNA:   3'- gaAGGUcUUGUCGCuaGgCGa---CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 196143 0.67 0.979042
Target:  5'- aCUUCCAGGGCcGCuccUCGCUccGGUCGa -3'
miRNA:   3'- -GAAGGUCUUGuCGcuaGGCGA--CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 194158 0.67 0.976732
Target:  5'- -aUCCuGAuCuGCGA-CCGCUGGUaCGa -3'
miRNA:   3'- gaAGGuCUuGuCGCUaGGCGACCA-GC- -5'
8968 5' -53.8 NC_002512.2 + 194030 0.67 0.976732
Target:  5'- --aCCGGGAguCGGCGAUCCaggccgccugGCUGGUg- -3'
miRNA:   3'- gaaGGUCUU--GUCGCUAGG----------CGACCAgc -5'
8968 5' -53.8 NC_002512.2 + 112062 0.67 0.972657
Target:  5'- -gUCCAGGACGuCGGUCCGCcgcgagcccgucgccUGG-CGg -3'
miRNA:   3'- gaAGGUCUUGUcGCUAGGCG---------------ACCaGC- -5'
8968 5' -53.8 NC_002512.2 + 64347 0.67 0.971562
Target:  5'- -gUCCAGcucgauGACGGCGGU--GCUGGUCu -3'
miRNA:   3'- gaAGGUC------UUGUCGCUAggCGACCAGc -5'
8968 5' -53.8 NC_002512.2 + 81195 0.67 0.967482
Target:  5'- -aUCCGGGcgaagGCGGCGAcgagggccacggcCCGCUGGaUCGg -3'
miRNA:   3'- gaAGGUCU-----UGUCGCUa------------GGCGACC-AGC- -5'
8968 5' -53.8 NC_002512.2 + 56194 0.68 0.966867
Target:  5'- --cCCAGGACGGCGGUgacgaacuguuugcgCCGCUcGUCc -3'
miRNA:   3'- gaaGGUCUUGUCGCUA---------------GGCGAcCAGc -5'
8968 5' -53.8 NC_002512.2 + 226792 0.68 0.965612
Target:  5'- uUUCCAGGGCGGagaaGAUCUcgucgGCggacgGGUCGu -3'
miRNA:   3'- gAAGGUCUUGUCg---CUAGG-----CGa----CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 225399 0.68 0.965612
Target:  5'- uCUUCgGGGACGGCG--CCGg-GGUCGg -3'
miRNA:   3'- -GAAGgUCUUGUCGCuaGGCgaCCAGC- -5'
8968 5' -53.8 NC_002512.2 + 92588 0.68 0.965612
Target:  5'- --gCCGGGagggGCGGCGGUCCcgagGCcGGUCGc -3'
miRNA:   3'- gaaGGUCU----UGUCGCUAGG----CGaCCAGC- -5'
8968 5' -53.8 NC_002512.2 + 145685 0.68 0.96233
Target:  5'- -gUCCGcGGACgAGUGGcugcgCCGCUGGUCc -3'
miRNA:   3'- gaAGGU-CUUG-UCGCUa----GGCGACCAGc -5'
8968 5' -53.8 NC_002512.2 + 143760 0.68 0.96233
Target:  5'- gCUUCCAGGuCcGCGAccuccUCCGCgcccgGGUCc -3'
miRNA:   3'- -GAAGGUCUuGuCGCU-----AGGCGa----CCAGc -5'
8968 5' -53.8 NC_002512.2 + 121943 0.68 0.96233
Target:  5'- --cCCGGAcccGCGGCGAugaugUUCGCUcacGGUCGg -3'
miRNA:   3'- gaaGGUCU---UGUCGCU-----AGGCGA---CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 215124 0.68 0.958837
Target:  5'- --gCCAGAACGGCcggGGUCCGCgcgacggGGgaggCGa -3'
miRNA:   3'- gaaGGUCUUGUCG---CUAGGCGa------CCa---GC- -5'
8968 5' -53.8 NC_002512.2 + 113720 0.68 0.955128
Target:  5'- -gUCCcgacgcGGGCGGCGAUCUGCgGGcCGa -3'
miRNA:   3'- gaAGGu-----CUUGUCGCUAGGCGaCCaGC- -5'
8968 5' -53.8 NC_002512.2 + 35976 0.68 0.955128
Target:  5'- -gUCCGGGAC-GCGAUCCGCcgaccgcGG-CGa -3'
miRNA:   3'- gaAGGUCUUGuCGCUAGGCGa------CCaGC- -5'
8968 5' -53.8 NC_002512.2 + 190224 0.68 0.951198
Target:  5'- -gUCCGGGACGGCcacGUCUGCUGcgacGUCa -3'
miRNA:   3'- gaAGGUCUUGUCGc--UAGGCGAC----CAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.