miRNA display CGI


Results 41 - 60 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 5' -53.8 NC_002512.2 + 113197 0.68 0.947044
Target:  5'- gUUCCAGAGCGGCGucggCCaGCggcucgcGGUCc -3'
miRNA:   3'- gAAGGUCUUGUCGCua--GG-CGa------CCAGc -5'
8968 5' -53.8 NC_002512.2 + 117316 0.69 0.938055
Target:  5'- --aCCGGAcggACGGCGGguucCCGCUGG-CGc -3'
miRNA:   3'- gaaGGUCU---UGUCGCUa---GGCGACCaGC- -5'
8968 5' -53.8 NC_002512.2 + 21158 0.69 0.938055
Target:  5'- -cUCCGGucgGCGGCGcUCCcgauCUGGUCGg -3'
miRNA:   3'- gaAGGUCu--UGUCGCuAGGc---GACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 66570 0.69 0.933215
Target:  5'- --gCCAGAAUA-CGAggagaccgCCGCUGGUCu -3'
miRNA:   3'- gaaGGUCUUGUcGCUa-------GGCGACCAGc -5'
8968 5' -53.8 NC_002512.2 + 96195 0.69 0.928143
Target:  5'- -gUCCGGGA-GGCGG-CCGCgaGGUCGg -3'
miRNA:   3'- gaAGGUCUUgUCGCUaGGCGa-CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 219385 0.69 0.928143
Target:  5'- --cCCuGGGCuGCc-UCCGCUGGUCGg -3'
miRNA:   3'- gaaGGuCUUGuCGcuAGGCGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 156181 0.69 0.922839
Target:  5'- ----gGGAGCguGGCGAUCC-CUGGUCGu -3'
miRNA:   3'- gaaggUCUUG--UCGCUAGGcGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 85528 0.69 0.922296
Target:  5'- ---aCAGGACGGCGGUCaugacggCGCUGG-CGg -3'
miRNA:   3'- gaagGUCUUGUCGCUAG-------GCGACCaGC- -5'
8968 5' -53.8 NC_002512.2 + 7312 0.7 0.899314
Target:  5'- -cUCCGcGACGGCGggCCGCggcgggacGGUCGg -3'
miRNA:   3'- gaAGGUcUUGUCGCuaGGCGa-------CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 38341 0.7 0.892864
Target:  5'- ---aCGGAucGCGGgGAUCCGCcgGGUCGc -3'
miRNA:   3'- gaagGUCU--UGUCgCUAGGCGa-CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 131730 0.7 0.892864
Target:  5'- -gUCCAGAcGCGGCGA-CCGCcGGggCGg -3'
miRNA:   3'- gaAGGUCU-UGUCGCUaGGCGaCCa-GC- -5'
8968 5' -53.8 NC_002512.2 + 161846 0.71 0.886192
Target:  5'- gCUUCCGGAcacggcguCGGCGGUCCuCccgGGUCGg -3'
miRNA:   3'- -GAAGGUCUu-------GUCGCUAGGcGa--CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 152286 0.71 0.879302
Target:  5'- gUUCCG--GCGGCGAUCCGCgagGGaccgcUCGg -3'
miRNA:   3'- gAAGGUcuUGUCGCUAGGCGa--CC-----AGC- -5'
8968 5' -53.8 NC_002512.2 + 153347 0.71 0.879302
Target:  5'- -gUCCGGGuCGGCGGgucCCGCUGGgcugggCGg -3'
miRNA:   3'- gaAGGUCUuGUCGCUa--GGCGACCa-----GC- -5'
8968 5' -53.8 NC_002512.2 + 127482 0.71 0.879302
Target:  5'- -gUCCGGAcGCGGCGAcgUCgGCUGGaaccUCGg -3'
miRNA:   3'- gaAGGUCU-UGUCGCU--AGgCGACC----AGC- -5'
8968 5' -53.8 NC_002512.2 + 8540 0.71 0.872198
Target:  5'- ---aCGGAGCGGCGAggCCGC-GGUCu -3'
miRNA:   3'- gaagGUCUUGUCGCUa-GGCGaCCAGc -5'
8968 5' -53.8 NC_002512.2 + 223108 0.71 0.857369
Target:  5'- --aCgGGGAgGGgGAUCCGCgGGUCGa -3'
miRNA:   3'- gaaGgUCUUgUCgCUAGGCGaCCAGC- -5'
8968 5' -53.8 NC_002512.2 + 184023 0.71 0.857369
Target:  5'- gUUCUAcgucGACcuCGGUCCGCUGGUCGa -3'
miRNA:   3'- gAAGGUc---UUGucGCUAGGCGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 166476 0.71 0.857369
Target:  5'- --gCgGGGACGGCGGgaCCGCgGGUCGg -3'
miRNA:   3'- gaaGgUCUUGUCGCUa-GGCGaCCAGC- -5'
8968 5' -53.8 NC_002512.2 + 113126 0.71 0.857369
Target:  5'- -gUCCAcGAACAGCGGcUCgGCcUGGUCc -3'
miRNA:   3'- gaAGGU-CUUGUCGCU-AGgCG-ACCAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.