Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8968 | 5' | -53.8 | NC_002512.2 | + | 108254 | 0.65 | 0.989369 |
Target: 5'- -aUCCAGGACGcggagccGCGAUUCGCcGGg-- -3' miRNA: 3'- gaAGGUCUUGU-------CGCUAGGCGaCCagc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 108110 | 0.66 | 0.988123 |
Target: 5'- -gUCCccgccuCGGCGGUCCGC-GGUCc -3' miRNA: 3'- gaAGGucuu--GUCGCUAGGCGaCCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 151876 | 0.66 | 0.988123 |
Target: 5'- -cUCguGGGCgccGGCGAUCCGC-GGaUCGu -3' miRNA: 3'- gaAGguCUUG---UCGCUAGGCGaCC-AGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 60894 | 0.66 | 0.988123 |
Target: 5'- --gCCGGcGC-GCGA-CCGCUcGGUCGa -3' miRNA: 3'- gaaGGUCuUGuCGCUaGGCGA-CCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 8920 | 0.66 | 0.986611 |
Target: 5'- --gCCAGGGCGGCc-UCgGCcgGGUCGg -3' miRNA: 3'- gaaGGUCUUGUCGcuAGgCGa-CCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 100449 | 0.66 | 0.986611 |
Target: 5'- uCUUCCGGGcgACGGCGAagagCGCguucucGGUCGu -3' miRNA: 3'- -GAAGGUCU--UGUCGCUag--GCGa-----CCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 204647 | 0.66 | 0.986611 |
Target: 5'- --aCCGGGACGGCGAcgCGCgggGGaUCGc -3' miRNA: 3'- gaaGGUCUUGUCGCUagGCGa--CC-AGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 208142 | 0.66 | 0.986611 |
Target: 5'- -gUCCgcAGAucGgAGCGGUCCGCgcGGUCc -3' miRNA: 3'- gaAGG--UCU--UgUCGCUAGGCGa-CCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 15383 | 0.66 | 0.986611 |
Target: 5'- -gUCgAGGuucuCGGCGAUCCGCaGGaggCGg -3' miRNA: 3'- gaAGgUCUu---GUCGCUAGGCGaCCa--GC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 122211 | 0.66 | 0.984954 |
Target: 5'- --cCCAGGACGGCucGGUCUGCgccaagaccGGUCu -3' miRNA: 3'- gaaGGUCUUGUCG--CUAGGCGa--------CCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 74198 | 0.66 | 0.984954 |
Target: 5'- ---aCAGGGCGGCGAcgUCCGUgGGcUCGc -3' miRNA: 3'- gaagGUCUUGUCGCU--AGGCGaCC-AGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 15682 | 0.66 | 0.984954 |
Target: 5'- --cCCGGGGCAGCGGg-CGCagcgGGUCc -3' miRNA: 3'- gaaGGUCUUGUCGCUagGCGa---CCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 108709 | 0.66 | 0.984954 |
Target: 5'- --cCCGGAACgggAGCGA-CCaGCUGGUgGu -3' miRNA: 3'- gaaGGUCUUG---UCGCUaGG-CGACCAgC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 135354 | 0.66 | 0.983145 |
Target: 5'- --gCUGGAACGGCGGUCCccCUGcGUCu -3' miRNA: 3'- gaaGGUCUUGUCGCUAGGc-GAC-CAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 204892 | 0.66 | 0.983145 |
Target: 5'- -cUCUcGGACGGCGAgcggUC-CUGGUCGg -3' miRNA: 3'- gaAGGuCUUGUCGCUa---GGcGACCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 168588 | 0.66 | 0.983145 |
Target: 5'- -aUCUGGAACAGCug-CgGUUGGUUGg -3' miRNA: 3'- gaAGGUCUUGUCGcuaGgCGACCAGC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 95185 | 0.66 | 0.983145 |
Target: 5'- --cCCAGGAugucgggcagccCGGCGAgcgcCCGCUGGUg- -3' miRNA: 3'- gaaGGUCUU------------GUCGCUa---GGCGACCAgc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 91301 | 0.66 | 0.983145 |
Target: 5'- -cUCCccGGCcGCGAUCCGCagcgUGGUCu -3' miRNA: 3'- gaAGGucUUGuCGCUAGGCG----ACCAGc -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 191653 | 0.66 | 0.983145 |
Target: 5'- --gCCAGGACGGCGGagacgUCCGCgucccgGGgcugggCGa -3' miRNA: 3'- gaaGGUCUUGUCGCU-----AGGCGa-----CCa-----GC- -5' |
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8968 | 5' | -53.8 | NC_002512.2 | + | 32964 | 0.66 | 0.983145 |
Target: 5'- --gCCGGGagACGuGUGAcgCCGUUGGUCGa -3' miRNA: 3'- gaaGGUCU--UGU-CGCUa-GGCGACCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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