miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8968 5' -53.8 NC_002512.2 + 108254 0.65 0.989369
Target:  5'- -aUCCAGGACGcggagccGCGAUUCGCcGGg-- -3'
miRNA:   3'- gaAGGUCUUGU-------CGCUAGGCGaCCagc -5'
8968 5' -53.8 NC_002512.2 + 92588 0.68 0.965612
Target:  5'- --gCCGGGagggGCGGCGGUCCcgagGCcGGUCGc -3'
miRNA:   3'- gaaGGUCU----UGUCGCUAGG----CGaCCAGC- -5'
8968 5' -53.8 NC_002512.2 + 143760 0.68 0.96233
Target:  5'- gCUUCCAGGuCcGCGAccuccUCCGCgcccgGGUCc -3'
miRNA:   3'- -GAAGGUCUuGuCGCU-----AGGCGa----CCAGc -5'
8968 5' -53.8 NC_002512.2 + 204300 1.09 0.007222
Target:  5'- aCUUCCAGAACAGCGAUCCGCUGGUCGu -3'
miRNA:   3'- -GAAGGUCUUGUCGCUAGGCGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 100449 0.66 0.986611
Target:  5'- uCUUCCGGGcgACGGCGAagagCGCguucucGGUCGu -3'
miRNA:   3'- -GAAGGUCU--UGUCGCUag--GCGa-----CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 108709 0.66 0.984954
Target:  5'- --cCCGGAACgggAGCGA-CCaGCUGGUgGu -3'
miRNA:   3'- gaaGGUCUUG---UCGCUaGG-CGACCAgC- -5'
8968 5' -53.8 NC_002512.2 + 168588 0.66 0.983145
Target:  5'- -aUCUGGAACAGCug-CgGUUGGUUGg -3'
miRNA:   3'- gaAGGUCUUGUCGcuaGgCGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 135354 0.66 0.983145
Target:  5'- --gCUGGAACGGCGGUCCccCUGcGUCu -3'
miRNA:   3'- gaaGGUCUUGUCGCUAGGc-GAC-CAGc -5'
8968 5' -53.8 NC_002512.2 + 191653 0.66 0.983145
Target:  5'- --gCCAGGACGGCGGagacgUCCGCgucccgGGgcugggCGa -3'
miRNA:   3'- gaaGGUCUUGUCGCU-----AGGCGa-----CCa-----GC- -5'
8968 5' -53.8 NC_002512.2 + 225399 0.68 0.965612
Target:  5'- uCUUCgGGGACGGCG--CCGg-GGUCGg -3'
miRNA:   3'- -GAAGgUCUUGUCGCuaGGCgaCCAGC- -5'
8968 5' -53.8 NC_002512.2 + 196143 0.67 0.979042
Target:  5'- aCUUCCAGGGCcGCuccUCGCUccGGUCGa -3'
miRNA:   3'- -GAAGGUCUUGuCGcuaGGCGA--CCAGC- -5'
8968 5' -53.8 NC_002512.2 + 32964 0.66 0.983145
Target:  5'- --gCCGGGagACGuGUGAcgCCGUUGGUCGa -3'
miRNA:   3'- gaaGGUCU--UGU-CGCUa-GGCGACCAGC- -5'
8968 5' -53.8 NC_002512.2 + 108110 0.66 0.988123
Target:  5'- -gUCCccgccuCGGCGGUCCGC-GGUCc -3'
miRNA:   3'- gaAGGucuu--GUCGCUAGGCGaCCAGc -5'
8968 5' -53.8 NC_002512.2 + 194158 0.67 0.976732
Target:  5'- -aUCCuGAuCuGCGA-CCGCUGGUaCGa -3'
miRNA:   3'- gaAGGuCUuGuCGCUaGGCGACCA-GC- -5'
8968 5' -53.8 NC_002512.2 + 208142 0.66 0.986611
Target:  5'- -gUCCgcAGAucGgAGCGGUCCGCgcGGUCc -3'
miRNA:   3'- gaAGG--UCU--UgUCGCUAGGCGa-CCAGc -5'
8968 5' -53.8 NC_002512.2 + 95185 0.66 0.983145
Target:  5'- --cCCAGGAugucgggcagccCGGCGAgcgcCCGCUGGUg- -3'
miRNA:   3'- gaaGGUCUU------------GUCGCUa---GGCGACCAgc -5'
8968 5' -53.8 NC_002512.2 + 194030 0.67 0.976732
Target:  5'- --aCCGGGAguCGGCGAUCCaggccgccugGCUGGUg- -3'
miRNA:   3'- gaaGGUCUU--GUCGCUAGG----------CGACCAgc -5'
8968 5' -53.8 NC_002512.2 + 145685 0.68 0.96233
Target:  5'- -gUCCGcGGACgAGUGGcugcgCCGCUGGUCc -3'
miRNA:   3'- gaAGGU-CUUG-UCGCUa----GGCGACCAGc -5'
8968 5' -53.8 NC_002512.2 + 204647 0.66 0.986611
Target:  5'- --aCCGGGACGGCGAcgCGCgggGGaUCGc -3'
miRNA:   3'- gaaGGUCUUGUCGCUagGCGa--CC-AGC- -5'
8968 5' -53.8 NC_002512.2 + 204892 0.66 0.983145
Target:  5'- -cUCUcGGACGGCGAgcggUC-CUGGUCGg -3'
miRNA:   3'- gaAGGuCUUGUCGCUa---GGcGACCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.