miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8970 5' -54.1 NC_002512.2 + 9330 0.7 0.883311
Target:  5'- --cGCACgGCCAGGuaGACGGCGGUg-- -3'
miRNA:   3'- agaCGUGgUGGUCC--UUGCUGUCGuag -5'
8970 5' -54.1 NC_002512.2 + 74006 0.7 0.890143
Target:  5'- --cGCGCCcGCCgucGGGGACGAaCAGCGUg -3'
miRNA:   3'- agaCGUGG-UGG---UCCUUGCU-GUCGUAg -5'
8970 5' -54.1 NC_002512.2 + 225256 0.7 0.890143
Target:  5'- -gUGCuccuucuCCGCCAGGAggGCGuccuCGGCGUCc -3'
miRNA:   3'- agACGu------GGUGGUCCU--UGCu---GUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 191404 0.7 0.890143
Target:  5'- cUUGaggaCACCAGGAugG-CAGCAUCc -3'
miRNA:   3'- aGACgug-GUGGUCCUugCuGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 228088 0.7 0.890143
Target:  5'- gCUGCACacggUCGGGAGCGAggagGGCGUCg -3'
miRNA:   3'- aGACGUGgu--GGUCCUUGCUg---UCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 138940 0.7 0.890143
Target:  5'- --aGCACCACCAccacGACGGCGGCGg- -3'
miRNA:   3'- agaCGUGGUGGUcc--UUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 92567 0.7 0.890143
Target:  5'- gUCggagGCGCCgacgccgcgGCCGGGAGgGGCGGCGg- -3'
miRNA:   3'- -AGa---CGUGG---------UGGUCCUUgCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 119133 0.69 0.894792
Target:  5'- -gUGCGCUACCGGGAcGCGACgauccugcugccggAGCuGUCg -3'
miRNA:   3'- agACGUGGUGGUCCU-UGCUG--------------UCG-UAG- -5'
8970 5' -54.1 NC_002512.2 + 120941 0.69 0.8961
Target:  5'- --cGCA-CACCAGGAACGACaccgccaGGCAgaUCa -3'
miRNA:   3'- agaCGUgGUGGUCCUUGCUG-------UCGU--AG- -5'
8970 5' -54.1 NC_002512.2 + 224074 0.69 0.89675
Target:  5'- --cGaCGCCGCCGaacGGGGCGGCGGCGg- -3'
miRNA:   3'- agaC-GUGGUGGU---CCUUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 217315 0.69 0.901872
Target:  5'- aUCgGCuCCGCCAGcGucugcagcacguACGGCGGCAUCg -3'
miRNA:   3'- -AGaCGuGGUGGUC-Cu-----------UGCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 177567 0.69 0.903129
Target:  5'- uUCgGgGCCgucGCCAGGAugcGCGcCAGCGUCu -3'
miRNA:   3'- -AGaCgUGG---UGGUCCU---UGCuGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 167187 0.69 0.903129
Target:  5'- gCUGCGCgucaagaucgugUACgGGGAcacCGACAGCGUCu -3'
miRNA:   3'- aGACGUG------------GUGgUCCUu--GCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 21458 0.69 0.909276
Target:  5'- aUCggGgGCCggcGCCGGGAGCGGCgcccguagAGCAUCc -3'
miRNA:   3'- -AGa-CgUGG---UGGUCCUUGCUG--------UCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 119212 0.69 0.909276
Target:  5'- gCUGCGCgagCACCAGGAcCGGCuGCccgcgGUCg -3'
miRNA:   3'- aGACGUG---GUGGUCCUuGCUGuCG-----UAG- -5'
8970 5' -54.1 NC_002512.2 + 132869 0.69 0.909276
Target:  5'- gCUGCcguCCGCgGaGGAaaucgACGACGGCGUCc -3'
miRNA:   3'- aGACGu--GGUGgU-CCU-----UGCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 117307 0.69 0.909276
Target:  5'- --cGCACUACCAccGGAcggACGGCGGguUCc -3'
miRNA:   3'- agaCGUGGUGGU--CCU---UGCUGUCguAG- -5'
8970 5' -54.1 NC_002512.2 + 12767 0.69 0.915189
Target:  5'- gCUGCuGCCGCCgcAGGAcuCGGCGGCGc- -3'
miRNA:   3'- aGACG-UGGUGG--UCCUu-GCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 133789 0.69 0.915189
Target:  5'- aCgGCGgCGgCGGGGACGACGGUcgCg -3'
miRNA:   3'- aGaCGUgGUgGUCCUUGCUGUCGuaG- -5'
8970 5' -54.1 NC_002512.2 + 169580 0.69 0.915189
Target:  5'- cUCcGCGuCCGCCAGGuacGACGACAG-GUCc -3'
miRNA:   3'- -AGaCGU-GGUGGUCC---UUGCUGUCgUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.