miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8971 5' -56.4 NC_002512.2 + 217970 0.67 0.928296
Target:  5'- aUUUGCcgaGCGCCGCUUCcUCGGCagcuUCGg -3'
miRNA:   3'- gGAGCGa--CGUGGCGAAGcAGUCG----AGC- -5'
8971 5' -56.4 NC_002512.2 + 178127 0.67 0.928296
Target:  5'- uCCUCGCU-CAUCGU--CGUCAGCg-- -3'
miRNA:   3'- -GGAGCGAcGUGGCGaaGCAGUCGagc -5'
8971 5' -56.4 NC_002512.2 + 82666 0.67 0.928296
Target:  5'- cCCUCGCUGUuuUCGCg--GUCccGCUCGg -3'
miRNA:   3'- -GGAGCGACGu-GGCGaagCAGu-CGAGC- -5'
8971 5' -56.4 NC_002512.2 + 167549 0.67 0.922049
Target:  5'- ---aGCUGCGCCGCcagggggugccCGUCGGCUUc -3'
miRNA:   3'- ggagCGACGUGGCGaa---------GCAGUCGAGc -5'
8971 5' -56.4 NC_002512.2 + 111388 0.67 0.917707
Target:  5'- aCCUCGUaGCcgucCCGCccCGgCAGCUCGg -3'
miRNA:   3'- -GGAGCGaCGu---GGCGaaGCaGUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 103617 0.67 0.91208
Target:  5'- gCCUCcCgGUACCGCUggagGUCGGCUuCGg -3'
miRNA:   3'- -GGAGcGaCGUGGCGAag--CAGUCGA-GC- -5'
8971 5' -56.4 NC_002512.2 + 219606 0.67 0.91208
Target:  5'- aCUCGCUGC-CCGgCUUC-UCGGgcaUCGg -3'
miRNA:   3'- gGAGCGACGuGGC-GAAGcAGUCg--AGC- -5'
8971 5' -56.4 NC_002512.2 + 89301 0.68 0.908598
Target:  5'- aCCUCGCaGCGuCCGCccucCGUCucgaccaggucggagAGCUCGu -3'
miRNA:   3'- -GGAGCGaCGU-GGCGaa--GCAG---------------UCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 186130 0.68 0.906232
Target:  5'- cCCUCGuCUGCAauaGCUUCcUCGGCgUCu -3'
miRNA:   3'- -GGAGC-GACGUgg-CGAAGcAGUCG-AGc -5'
8971 5' -56.4 NC_002512.2 + 176583 0.68 0.906232
Target:  5'- ---gGCcaGCACCGUgucgcUCGUCAGCUUGg -3'
miRNA:   3'- ggagCGa-CGUGGCGa----AGCAGUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 191173 0.68 0.905036
Target:  5'- gUCUCGCgucucuaucuggGCgACCGuCUccucCGUCGGCUCGg -3'
miRNA:   3'- -GGAGCGa-----------CG-UGGC-GAa---GCAGUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 26514 0.68 0.900166
Target:  5'- uCCUgaUGCUGagcaACCGCggccuggUCGgCAGCUCGc -3'
miRNA:   3'- -GGA--GCGACg---UGGCGa------AGCaGUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 142740 0.68 0.893884
Target:  5'- gUUCGCguUGC-CCGCcUUGUCcAGCUCGu -3'
miRNA:   3'- gGAGCG--ACGuGGCGaAGCAG-UCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 148691 0.68 0.887388
Target:  5'- cCCUCGU--CGCCGCUucgcccggaUCGUCGGCg-- -3'
miRNA:   3'- -GGAGCGacGUGGCGA---------AGCAGUCGagc -5'
8971 5' -56.4 NC_002512.2 + 201304 0.68 0.887388
Target:  5'- --aCGC-GCACCGC-UCGgaUCAGCUCc -3'
miRNA:   3'- ggaGCGaCGUGGCGaAGC--AGUCGAGc -5'
8971 5' -56.4 NC_002512.2 + 112893 0.68 0.887388
Target:  5'- uUCUCGUcgGuCGCCGCgucgCGgacCAGCUCGa -3'
miRNA:   3'- -GGAGCGa-C-GUGGCGaa--GCa--GUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 126010 0.68 0.880684
Target:  5'- gUCUCGUUGCACgCGU-UCGUCaggcccAGCUCc -3'
miRNA:   3'- -GGAGCGACGUG-GCGaAGCAG------UCGAGc -5'
8971 5' -56.4 NC_002512.2 + 80164 0.69 0.866661
Target:  5'- uCCUCGCUGuCGCCGU--CGUC-GCUg- -3'
miRNA:   3'- -GGAGCGAC-GUGGCGaaGCAGuCGAgc -5'
8971 5' -56.4 NC_002512.2 + 120898 0.69 0.859352
Target:  5'- uCCUcCGUcGC-CCGCUUCuUCAGUUCGc -3'
miRNA:   3'- -GGA-GCGaCGuGGCGAAGcAGUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 124664 0.69 0.859352
Target:  5'- --aCGCUGUACgC-CUUCGcgcUCAGCUCGg -3'
miRNA:   3'- ggaGCGACGUG-GcGAAGC---AGUCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.