miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8973 5' -61.3 NC_002512.2 + 149882 0.76 0.205888
Target:  5'- uCCGGCUCCGGCugccGCUGCCUgGaCCUc -3'
miRNA:   3'- uGGCCGAGGUCGu---CGACGGAgU-GGAa -5'
8973 5' -61.3 NC_002512.2 + 148854 0.69 0.537343
Target:  5'- uGCCGGaacgCCGGCuGCcGCCUcCGCCUg -3'
miRNA:   3'- -UGGCCga--GGUCGuCGaCGGA-GUGGAa -5'
8973 5' -61.3 NC_002512.2 + 145615 0.67 0.674384
Target:  5'- gGCgGGCgUUCGGCccGCUGCC-CGCCUUc -3'
miRNA:   3'- -UGgCCG-AGGUCGu-CGACGGaGUGGAA- -5'
8973 5' -61.3 NC_002512.2 + 137257 0.67 0.664569
Target:  5'- cCCGGCgCCGGCGGCcGCCgu-CCg- -3'
miRNA:   3'- uGGCCGaGGUCGUCGaCGGaguGGaa -5'
8973 5' -61.3 NC_002512.2 + 129946 0.71 0.419499
Target:  5'- cACCGGCggCAGCAGCaGCCgaCGCCg- -3'
miRNA:   3'- -UGGCCGagGUCGUCGaCGGa-GUGGaa -5'
8973 5' -61.3 NC_002512.2 + 126521 0.74 0.285085
Target:  5'- -gCGGCUCCGGCGGcCUGaCCUCgACCg- -3'
miRNA:   3'- ugGCCGAGGUCGUC-GAC-GGAG-UGGaa -5'
8973 5' -61.3 NC_002512.2 + 126445 0.68 0.614296
Target:  5'- gGCCGGCgaCGGCGGCgGCCgccuuguUCGCCg- -3'
miRNA:   3'- -UGGCCGagGUCGUCGaCGG-------AGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 124818 0.67 0.63501
Target:  5'- cGCCGGCUucuUCGGCuGCgUGCCggaCACCg- -3'
miRNA:   3'- -UGGCCGA---GGUCGuCG-ACGGa--GUGGaa -5'
8973 5' -61.3 NC_002512.2 + 120528 0.67 0.684166
Target:  5'- gGCgCGGCUuucccCCGGCGGCUcCCUCGCa-- -3'
miRNA:   3'- -UG-GCCGA-----GGUCGUCGAcGGAGUGgaa -5'
8973 5' -61.3 NC_002512.2 + 119582 0.68 0.61134
Target:  5'- cCCGGCggguccccucgcgCCAGCAGUgucGCCcUCGCCg- -3'
miRNA:   3'- uGGCCGa------------GGUCGUCGa--CGG-AGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 118912 0.66 0.722815
Target:  5'- cUCGGUccaCCGGCGGCUGCUcgUCAUCg- -3'
miRNA:   3'- uGGCCGa--GGUCGUCGACGG--AGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 117588 0.67 0.634023
Target:  5'- cACCGGCaUCgAGCAGCUcugcguggauuacGCCcugCACCg- -3'
miRNA:   3'- -UGGCCG-AGgUCGUCGA-------------CGGa--GUGGaa -5'
8973 5' -61.3 NC_002512.2 + 115777 0.7 0.49035
Target:  5'- gACCGGaUCCcGCAGC-GCCUgACCUa -3'
miRNA:   3'- -UGGCCgAGGuCGUCGaCGGAgUGGAa -5'
8973 5' -61.3 NC_002512.2 + 113275 0.67 0.684166
Target:  5'- gGCCGGCggggcagCC-GCGGCggGCCUC-CCg- -3'
miRNA:   3'- -UGGCCGa------GGuCGUCGa-CGGAGuGGaa -5'
8973 5' -61.3 NC_002512.2 + 112793 0.68 0.585793
Target:  5'- uGCCGGgUCCAG-GGCgGCCcgCACCUc -3'
miRNA:   3'- -UGGCCgAGGUCgUCGaCGGa-GUGGAa -5'
8973 5' -61.3 NC_002512.2 + 107495 0.68 0.585793
Target:  5'- gACCGGC-CC-GCAGCgGUCUCugCg- -3'
miRNA:   3'- -UGGCCGaGGuCGUCGaCGGAGugGaa -5'
8973 5' -61.3 NC_002512.2 + 104010 0.67 0.65473
Target:  5'- uCCGGUUCCAGCcG-UGCC-CGCCg- -3'
miRNA:   3'- uGGCCGAGGUCGuCgACGGaGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 102332 0.7 0.499604
Target:  5'- gGCCGGCUCCGGUacgacaAGCgcguCCUCgGCCUg -3'
miRNA:   3'- -UGGCCGAGGUCG------UCGac--GGAG-UGGAa -5'
8973 5' -61.3 NC_002512.2 + 84539 0.66 0.722815
Target:  5'- aGCCGGCgUCgGGCGGCgcggcgagGCgCUCgACCUc -3'
miRNA:   3'- -UGGCCG-AGgUCGUCGa-------CG-GAG-UGGAa -5'
8973 5' -61.3 NC_002512.2 + 81040 0.68 0.576017
Target:  5'- aGCCGGCguUCCGGCAGCggugcGCCcggacCGCCc- -3'
miRNA:   3'- -UGGCCG--AGGUCGUCGa----CGGa----GUGGaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.