miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8975 5' -56 NC_002512.2 + 187052 0.66 0.951793
Target:  5'- uCCCUGGAGAcgggcuGGAUGaCGUcucaggagGCCGUGc- -3'
miRNA:   3'- cGGGACCUCU------UCUAC-GCG--------CGGUACag -5'
8975 5' -56 NC_002512.2 + 141423 0.66 0.947694
Target:  5'- aUCCUGGAGAGGGgacUGCccCGCCugcugGUCc -3'
miRNA:   3'- cGGGACCUCUUCU---ACGc-GCGGua---CAG- -5'
8975 5' -56 NC_002512.2 + 55945 0.66 0.947694
Target:  5'- aCUCUGGAGAuGG-GCGUGUUGUGUUc -3'
miRNA:   3'- cGGGACCUCUuCUaCGCGCGGUACAG- -5'
8975 5' -56 NC_002512.2 + 70802 0.66 0.943371
Target:  5'- cGCCguugcgcaggUUGGGGGAGggGCGCGUCGUc-- -3'
miRNA:   3'- -CGG----------GACCUCUUCuaCGCGCGGUAcag -5'
8975 5' -56 NC_002512.2 + 76349 0.66 0.943371
Target:  5'- uCCC-GGAGAAGAUGUcgagcgacauGCaGCCGUGa- -3'
miRNA:   3'- cGGGaCCUCUUCUACG----------CG-CGGUACag -5'
8975 5' -56 NC_002512.2 + 123638 0.66 0.943371
Target:  5'- gGUCCcGG-GGAGA-GCGCGCCGcgGUUc -3'
miRNA:   3'- -CGGGaCCuCUUCUaCGCGCGGUa-CAG- -5'
8975 5' -56 NC_002512.2 + 146819 0.66 0.943371
Target:  5'- -aCCUGGAGAccuucGCGCGCgAgGUCg -3'
miRNA:   3'- cgGGACCUCUucua-CGCGCGgUaCAG- -5'
8975 5' -56 NC_002512.2 + 199891 0.66 0.943371
Target:  5'- cGCCCUGGucucGAGAc-CGC-CCGUGUCu -3'
miRNA:   3'- -CGGGACCuc--UUCUacGCGcGGUACAG- -5'
8975 5' -56 NC_002512.2 + 32841 0.66 0.938821
Target:  5'- uGCCCaGGcugcAGGAGGUGacgGUGCCGUGg- -3'
miRNA:   3'- -CGGGaCC----UCUUCUACg--CGCGGUACag -5'
8975 5' -56 NC_002512.2 + 137059 0.66 0.938821
Target:  5'- gGCCagGGAGGAGgcGcCGCGCCcgGg- -3'
miRNA:   3'- -CGGgaCCUCUUCuaC-GCGCGGuaCag -5'
8975 5' -56 NC_002512.2 + 119276 0.66 0.938821
Target:  5'- gGCCCUGGAGGacagcAGcAUGC-UGCUgaugaaGUGUCa -3'
miRNA:   3'- -CGGGACCUCU-----UC-UACGcGCGG------UACAG- -5'
8975 5' -56 NC_002512.2 + 90102 0.66 0.938821
Target:  5'- cGgCCUGGAGg----GUGCGCCGgacgaUGUCg -3'
miRNA:   3'- -CgGGACCUCuucuaCGCGCGGU-----ACAG- -5'
8975 5' -56 NC_002512.2 + 102452 0.66 0.937884
Target:  5'- aCCCgcauggcgucgcGGAGGAGG-GCGCGCCc-GUCg -3'
miRNA:   3'- cGGGa-----------CCUCUUCUaCGCGCGGuaCAG- -5'
8975 5' -56 NC_002512.2 + 220982 0.66 0.934043
Target:  5'- cGCCCUGGccaGGAGGGUcgaGUGCcCCAacggcuucUGUCa -3'
miRNA:   3'- -CGGGACC---UCUUCUA---CGCGcGGU--------ACAG- -5'
8975 5' -56 NC_002512.2 + 59404 0.66 0.932565
Target:  5'- gGCgCUGGAGAucGAcacgcgcugcaaccUGUGCGCCAUcGUg -3'
miRNA:   3'- -CGgGACCUCUu-CU--------------ACGCGCGGUA-CAg -5'
8975 5' -56 NC_002512.2 + 185427 0.67 0.929036
Target:  5'- cGCCCUGGAGGucuucGAgGC-CGUCcUGUCc -3'
miRNA:   3'- -CGGGACCUCUu----CUaCGcGCGGuACAG- -5'
8975 5' -56 NC_002512.2 + 163692 0.67 0.929036
Target:  5'- cGCCCUGuccGA--AUGCGUGCCG-GUCg -3'
miRNA:   3'- -CGGGACcu-CUucUACGCGCGGUaCAG- -5'
8975 5' -56 NC_002512.2 + 124001 0.67 0.929036
Target:  5'- aGCCCaccgggugGGAGAcGGAcccGCGCGCCugcGUCc -3'
miRNA:   3'- -CGGGa-------CCUCU-UCUa--CGCGCGGua-CAG- -5'
8975 5' -56 NC_002512.2 + 82026 0.67 0.929036
Target:  5'- cGCCCgGGucGGGGU-CGCGCCGgcggcgGUCg -3'
miRNA:   3'- -CGGGaCCucUUCUAcGCGCGGUa-----CAG- -5'
8975 5' -56 NC_002512.2 + 72028 0.67 0.923799
Target:  5'- cGCCCUGGAuGGGcagcuUGCGCuGCgCGUGcCg -3'
miRNA:   3'- -CGGGACCUcUUCu----ACGCG-CG-GUACaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.