Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8975 | 5' | -56 | NC_002512.2 | + | 76349 | 0.66 | 0.943371 |
Target: 5'- uCCC-GGAGAAGAUGUcgagcgacauGCaGCCGUGa- -3' miRNA: 3'- cGGGaCCUCUUCUACG----------CG-CGGUACag -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 90102 | 0.66 | 0.938821 |
Target: 5'- cGgCCUGGAGg----GUGCGCCGgacgaUGUCg -3' miRNA: 3'- -CgGGACCUCuucuaCGCGCGGU-----ACAG- -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 119276 | 0.66 | 0.938821 |
Target: 5'- gGCCCUGGAGGacagcAGcAUGC-UGCUgaugaaGUGUCa -3' miRNA: 3'- -CGGGACCUCU-----UC-UACGcGCGG------UACAG- -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 102452 | 0.66 | 0.937884 |
Target: 5'- aCCCgcauggcgucgcGGAGGAGG-GCGCGCCc-GUCg -3' miRNA: 3'- cGGGa-----------CCUCUUCUaCGCGCGGuaCAG- -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 220982 | 0.66 | 0.934043 |
Target: 5'- cGCCCUGGccaGGAGGGUcgaGUGCcCCAacggcuucUGUCa -3' miRNA: 3'- -CGGGACC---UCUUCUA---CGCGcGGU--------ACAG- -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 187052 | 0.66 | 0.951793 |
Target: 5'- uCCCUGGAGAcgggcuGGAUGaCGUcucaggagGCCGUGc- -3' miRNA: 3'- cGGGACCUCU------UCUAC-GCG--------CGGUACag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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