Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8975 | 5' | -56 | NC_002512.2 | + | 222695 | 0.7 | 0.793083 |
Target: 5'- cGCCCggcacGGGGAGGAgUGCGuCGCCAccUGcCu -3' miRNA: 3'- -CGGGa----CCUCUUCU-ACGC-GCGGU--ACaG- -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 220529 | 0.7 | 0.819099 |
Target: 5'- -aCCUGGAGGAGcUGCuGCGCgAgggcGUCa -3' miRNA: 3'- cgGGACCUCUUCuACG-CGCGgUa---CAG- -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 192667 | 0.69 | 0.827454 |
Target: 5'- uGCCCcacucggaucUGGGGGAGGUguggcgGCGCGCCGaggccGUCu -3' miRNA: 3'- -CGGG----------ACCUCUUCUA------CGCGCGGUa----CAG- -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 93371 | 0.69 | 0.851468 |
Target: 5'- uCCCgGGAGggGAUcgggccgcaggGCGCGCCGa--- -3' miRNA: 3'- cGGGaCCUCuuCUA-----------CGCGCGGUacag -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 88931 | 0.69 | 0.859099 |
Target: 5'- aGUUCgggGGAGAAGcgGCGCGUCucGUCc -3' miRNA: 3'- -CGGGa--CCUCUUCuaCGCGCGGuaCAG- -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 92167 | 0.7 | 0.784121 |
Target: 5'- uCCCUGGAGAA----CGCcgGCCAUGUCu -3' miRNA: 3'- cGGGACCUCUUcuacGCG--CGGUACAG- -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 59376 | 0.68 | 0.866533 |
Target: 5'- -aCgUGGcGGAGAUGCGCGaCAUGUg -3' miRNA: 3'- cgGgACCuCUUCUACGCGCgGUACAg -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 97235 | 0.68 | 0.880786 |
Target: 5'- gGCgCUgGGAGAGGAgcUGCGgGCCgaGUGUa -3' miRNA: 3'- -CGgGA-CCUCUUCU--ACGCgCGG--UACAg -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 20711 | 0.68 | 0.880786 |
Target: 5'- cGUCCacGAGGAucuUGCGCGCCGUGcCg -3' miRNA: 3'- -CGGGacCUCUUcu-ACGCGCGGUACaG- -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 47315 | 0.68 | 0.886925 |
Target: 5'- aGCUgCUGGAGGAGAUguaccgcgGCGCGUUcgaggccuuccggGUGUCg -3' miRNA: 3'- -CGG-GACCUCUUCUA--------CGCGCGG-------------UACAG- -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 47256 | 0.68 | 0.89419 |
Target: 5'- gGCgCUGGAGAAGAUcGCGacgGCCAc--- -3' miRNA: 3'- -CGgGACCUCUUCUA-CGCg--CGGUacag -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 59404 | 0.66 | 0.932565 |
Target: 5'- gGCgCUGGAGAucGAcacgcgcugcaaccUGUGCGCCAUcGUg -3' miRNA: 3'- -CGgGACCUCUu-CU--------------ACGCGCGGUA-CAg -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 32841 | 0.66 | 0.938821 |
Target: 5'- uGCCCaGGcugcAGGAGGUGacgGUGCCGUGg- -3' miRNA: 3'- -CGGGaCC----UCUUCUACg--CGCGGUACag -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 124001 | 0.67 | 0.929036 |
Target: 5'- aGCCCaccgggugGGAGAcGGAcccGCGCGCCugcGUCc -3' miRNA: 3'- -CGGGa-------CCUCU-UCUa--CGCGCGGua-CAG- -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 70802 | 0.66 | 0.943371 |
Target: 5'- cGCCguugcgcaggUUGGGGGAGggGCGCGUCGUc-- -3' miRNA: 3'- -CGG----------GACCUCUUCuaCGCGCGGUAcag -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 141423 | 0.66 | 0.947694 |
Target: 5'- aUCCUGGAGAGGGgacUGCccCGCCugcugGUCc -3' miRNA: 3'- cGGGACCUCUUCU---ACGc-GCGGua---CAG- -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 60845 | 0.67 | 0.918333 |
Target: 5'- cGCCC--GAGGAGAUGCcgGCGCCGc--- -3' miRNA: 3'- -CGGGacCUCUUCUACG--CGCGGUacag -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 137059 | 0.66 | 0.938821 |
Target: 5'- gGCCagGGAGGAGgcGcCGCGCCcgGg- -3' miRNA: 3'- -CGGgaCCUCUUCuaC-GCGCGGuaCag -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 32177 | 0.67 | 0.912637 |
Target: 5'- aCCCUGGGGuc---GCGgGCCAUGg- -3' miRNA: 3'- cGGGACCUCuucuaCGCgCGGUACag -5' |
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8975 | 5' | -56 | NC_002512.2 | + | 121525 | 0.68 | 0.89419 |
Target: 5'- aUCCUcGGGGAGcuccgGCGCGCCGggGUCg -3' miRNA: 3'- cGGGA-CCUCUUcua--CGCGCGGUa-CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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