miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8975 5' -56 NC_002512.2 + 222695 0.7 0.793083
Target:  5'- cGCCCggcacGGGGAGGAgUGCGuCGCCAccUGcCu -3'
miRNA:   3'- -CGGGa----CCUCUUCU-ACGC-GCGGU--ACaG- -5'
8975 5' -56 NC_002512.2 + 220982 0.66 0.934043
Target:  5'- cGCCCUGGccaGGAGGGUcgaGUGCcCCAacggcuucUGUCa -3'
miRNA:   3'- -CGGGACC---UCUUCUA---CGCGcGGU--------ACAG- -5'
8975 5' -56 NC_002512.2 + 220529 0.7 0.819099
Target:  5'- -aCCUGGAGGAGcUGCuGCGCgAgggcGUCa -3'
miRNA:   3'- cgGGACCUCUUCuACG-CGCGgUa---CAG- -5'
8975 5' -56 NC_002512.2 + 218092 0.67 0.906713
Target:  5'- uGUCCgUGGGGAAGcgGgcguCGCGCCcgggGUCg -3'
miRNA:   3'- -CGGG-ACCUCUUCuaC----GCGCGGua--CAG- -5'
8975 5' -56 NC_002512.2 + 211883 0.69 0.851468
Target:  5'- cGCCCUGGAGcGGGUcaccuuccgGgGCuGCCGcGUCg -3'
miRNA:   3'- -CGGGACCUCuUCUA---------CgCG-CGGUaCAG- -5'
8975 5' -56 NC_002512.2 + 207454 0.68 0.873763
Target:  5'- aGCCCagcGGAuGggGuUGCGCGuCCGaGUCg -3'
miRNA:   3'- -CGGGa--CCU-CuuCuACGCGC-GGUaCAG- -5'
8975 5' -56 NC_002512.2 + 199891 0.66 0.943371
Target:  5'- cGCCCUGGucucGAGAc-CGC-CCGUGUCu -3'
miRNA:   3'- -CGGGACCuc--UUCUacGCGcGGUACAG- -5'
8975 5' -56 NC_002512.2 + 197739 1.1 0.003394
Target:  5'- gGCCCUGGAGAAGAUGCGCGCCAUGUCc -3'
miRNA:   3'- -CGGGACCUCUUCUACGCGCGGUACAG- -5'
8975 5' -56 NC_002512.2 + 192667 0.69 0.827454
Target:  5'- uGCCCcacucggaucUGGGGGAGGUguggcgGCGCGCCGaggccGUCu -3'
miRNA:   3'- -CGGG----------ACCUCUUCUA------CGCGCGGUa----CAG- -5'
8975 5' -56 NC_002512.2 + 187052 0.66 0.951793
Target:  5'- uCCCUGGAGAcgggcuGGAUGaCGUcucaggagGCCGUGc- -3'
miRNA:   3'- cGGGACCUCU------UCUAC-GCG--------CGGUACag -5'
8975 5' -56 NC_002512.2 + 185427 0.67 0.929036
Target:  5'- cGCCCUGGAGGucuucGAgGC-CGUCcUGUCc -3'
miRNA:   3'- -CGGGACCUCUu----CUaCGcGCGGuACAG- -5'
8975 5' -56 NC_002512.2 + 179394 0.68 0.900563
Target:  5'- cGCCUcGGGGA---UGCGCGCCAUc-- -3'
miRNA:   3'- -CGGGaCCUCUucuACGCGCGGUAcag -5'
8975 5' -56 NC_002512.2 + 177560 0.67 0.912637
Target:  5'- cGUCUgguucGGGGccgucgccAGGAUGCGCGCCAgcGUCu -3'
miRNA:   3'- -CGGGa----CCUC--------UUCUACGCGCGGUa-CAG- -5'
8975 5' -56 NC_002512.2 + 171655 0.69 0.841263
Target:  5'- gGCCCUGuugcGGGAcaucuacgcgcgcgGGGUGCGCGCCGc--- -3'
miRNA:   3'- -CGGGAC----CUCU--------------UCUACGCGCGGUacag -5'
8975 5' -56 NC_002512.2 + 163692 0.67 0.929036
Target:  5'- cGCCCUGuccGA--AUGCGUGCCG-GUCg -3'
miRNA:   3'- -CGGGACcu-CUucUACGCGCGGUaCAG- -5'
8975 5' -56 NC_002512.2 + 146819 0.66 0.943371
Target:  5'- -aCCUGGAGAccuucGCGCGCgAgGUCg -3'
miRNA:   3'- cgGGACCUCUucua-CGCGCGgUaCAG- -5'
8975 5' -56 NC_002512.2 + 141423 0.66 0.947694
Target:  5'- aUCCUGGAGAGGGgacUGCccCGCCugcugGUCc -3'
miRNA:   3'- cGGGACCUCUUCU---ACGc-GCGGua---CAG- -5'
8975 5' -56 NC_002512.2 + 137059 0.66 0.938821
Target:  5'- gGCCagGGAGGAGgcGcCGCGCCcgGg- -3'
miRNA:   3'- -CGGgaCCUCUUCuaC-GCGCGGuaCag -5'
8975 5' -56 NC_002512.2 + 133256 0.68 0.887596
Target:  5'- uCCCggcGGGGAAGAUGC-CGCCGa--- -3'
miRNA:   3'- cGGGa--CCUCUUCUACGcGCGGUacag -5'
8975 5' -56 NC_002512.2 + 127600 0.72 0.708419
Target:  5'- cGCCCUGGcGGucGAcGCGCGCCGa--- -3'
miRNA:   3'- -CGGGACC-UCuuCUaCGCGCGGUacag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.