Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8976 | 3' | -55.2 | NC_002512.2 | + | 106898 | 0.67 | 0.933206 |
Target: 5'- cUCCUUcgGCGGGauCCGCCUcUUccucguccucgUCGAg -3' miRNA: 3'- -AGGAGuaCGCCC--GGCGGAuAA-----------AGCUa -5' |
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8976 | 3' | -55.2 | NC_002512.2 | + | 135269 | 0.67 | 0.933206 |
Target: 5'- -gCUCGacgagGCcuGGGCCGCCUGcUUCGGg -3' miRNA: 3'- agGAGUa----CG--CCCGGCGGAUaAAGCUa -5' |
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8976 | 3' | -55.2 | NC_002512.2 | + | 117715 | 0.67 | 0.942243 |
Target: 5'- cUCCgcgCGUGCGGGCucgagcgccggcuCGCCg---UCGAc -3' miRNA: 3'- -AGGa--GUACGCCCG-------------GCGGauaaAGCUa -5' |
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8976 | 3' | -55.2 | NC_002512.2 | + | 86704 | 0.67 | 0.947092 |
Target: 5'- cCCUCGUGCaGGGCgCGCaCUA---CGAg -3' miRNA: 3'- aGGAGUACG-CCCG-GCG-GAUaaaGCUa -5' |
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8976 | 3' | -55.2 | NC_002512.2 | + | 9673 | 0.66 | 0.958924 |
Target: 5'- -aCUCGUccccCGGGCCGCCg---UCGGg -3' miRNA: 3'- agGAGUAc---GCCCGGCGGauaaAGCUa -5' |
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8976 | 3' | -55.2 | NC_002512.2 | + | 42436 | 0.66 | 0.962427 |
Target: 5'- -aCUCAcaCGGGCCGCCUcc-UCGGc -3' miRNA: 3'- agGAGUacGCCCGGCGGAuaaAGCUa -5' |
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8976 | 3' | -55.2 | NC_002512.2 | + | 17490 | 0.66 | 0.965716 |
Target: 5'- gUCCUCGU-C-GGCCGCCUcc-UCGAUc -3' miRNA: 3'- -AGGAGUAcGcCCGGCGGAuaaAGCUA- -5' |
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8976 | 3' | -55.2 | NC_002512.2 | + | 80052 | 0.66 | 0.965716 |
Target: 5'- gUCCUCGUcgcGCGGGUCGCucuccgccucgCUGUccUCGAc -3' miRNA: 3'- -AGGAGUA---CGCCCGGCG-----------GAUAa-AGCUa -5' |
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8976 | 3' | -55.2 | NC_002512.2 | + | 78847 | 0.72 | 0.723793 |
Target: 5'- aCCgCGUGaCGGGCCGCCgcc-UCGAg -3' miRNA: 3'- aGGaGUAC-GCCCGGCGGauaaAGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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