miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8977 3' -56.5 NC_002512.2 + 197498 1.09 0.004581
Target:  5'- gGACACGACGCGUUCGUGGGCCGCAAGa -3'
miRNA:   3'- -CUGUGCUGCGCAAGCACCCGGCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 13363 0.81 0.274509
Target:  5'- cGACucgGGCGCGUUCGUGGuGCCGCGGu -3'
miRNA:   3'- -CUGug-CUGCGCAAGCACC-CGGCGUUc -5'
8977 3' -56.5 NC_002512.2 + 85185 0.78 0.38942
Target:  5'- aGGCGCGACGgGUcccCGUGGGUCGCcGGg -3'
miRNA:   3'- -CUGUGCUGCgCAa--GCACCCGGCGuUC- -5'
8977 3' -56.5 NC_002512.2 + 205016 0.73 0.639178
Target:  5'- --aACGACGCGccUCGgucgGGGCCGCGu- -3'
miRNA:   3'- cugUGCUGCGCa-AGCa---CCCGGCGUuc -5'
8977 3' -56.5 NC_002512.2 + 51000 0.73 0.649061
Target:  5'- aGCugGACGCGUUCGUGGagaacaacCCGCu-- -3'
miRNA:   3'- cUGugCUGCGCAAGCACCc-------GGCGuuc -5'
8977 3' -56.5 NC_002512.2 + 4592 0.73 0.658931
Target:  5'- gGAgGCGGCGC---CGcGGGCCGCGAGa -3'
miRNA:   3'- -CUgUGCUGCGcaaGCaCCCGGCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 131022 0.72 0.678603
Target:  5'- cGACGCGcucgaGgGCG-UCG-GGGCCGCGGGg -3'
miRNA:   3'- -CUGUGC-----UgCGCaAGCaCCCGGCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 157266 0.72 0.678603
Target:  5'- cGGCGagGACGUGUUCGUGGcGCgcaGCAAGc -3'
miRNA:   3'- -CUGUg-CUGCGCAAGCACC-CGg--CGUUC- -5'
8977 3' -56.5 NC_002512.2 + 21056 0.72 0.678603
Target:  5'- cGGCGCGGCGCGUgagggCGcacGGGCgGCGGu -3'
miRNA:   3'- -CUGUGCUGCGCAa----GCa--CCCGgCGUUc -5'
8977 3' -56.5 NC_002512.2 + 12509 0.72 0.707824
Target:  5'- -cCACGACGCGUaCGUGcaccaGGCCGCc-- -3'
miRNA:   3'- cuGUGCUGCGCAaGCAC-----CCGGCGuuc -5'
8977 3' -56.5 NC_002512.2 + 5492 0.71 0.736506
Target:  5'- cGugGCG-CGCGUccgCGccgGGGUCGCGAGg -3'
miRNA:   3'- -CugUGCuGCGCAa--GCa--CCCGGCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 78547 0.71 0.736506
Target:  5'- aACAUGGCGC---CGgccGGGCCGCGAGg -3'
miRNA:   3'- cUGUGCUGCGcaaGCa--CCCGGCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 111346 0.71 0.754291
Target:  5'- cGACGCGAcCGCGUUCGUuucccccGGacGCCGgAGGg -3'
miRNA:   3'- -CUGUGCU-GCGCAAGCA-------CC--CGGCgUUC- -5'
8977 3' -56.5 NC_002512.2 + 134888 0.71 0.755217
Target:  5'- cGACGCGACGCGUccucauccggaUCGacgGGGCgaucCGCAGc -3'
miRNA:   3'- -CUGUGCUGCGCA-----------AGCa--CCCG----GCGUUc -5'
8977 3' -56.5 NC_002512.2 + 160474 0.71 0.764425
Target:  5'- gGGCACGAgCGCauGUUCGUGGGuuccaucuCCGCGGc -3'
miRNA:   3'- -CUGUGCU-GCG--CAAGCACCC--------GGCGUUc -5'
8977 3' -56.5 NC_002512.2 + 90936 0.71 0.764425
Target:  5'- gGGCGCGACcgggGCGUgCGUGGG-CGCGAc -3'
miRNA:   3'- -CUGUGCUG----CGCAaGCACCCgGCGUUc -5'
8977 3' -56.5 NC_002512.2 + 14050 0.71 0.764425
Target:  5'- aGGCgGCGGCGCGUUCc--GGCCGgGAGg -3'
miRNA:   3'- -CUG-UGCUGCGCAAGcacCCGGCgUUC- -5'
8977 3' -56.5 NC_002512.2 + 74202 0.7 0.773523
Target:  5'- --gGCGGCGaCGUcCGUGGGCuCGCGGu -3'
miRNA:   3'- cugUGCUGC-GCAaGCACCCG-GCGUUc -5'
8977 3' -56.5 NC_002512.2 + 227426 0.7 0.773523
Target:  5'- -uCGCG-CGCGggCGcGGGCCGCGGu -3'
miRNA:   3'- cuGUGCuGCGCaaGCaCCCGGCGUUc -5'
8977 3' -56.5 NC_002512.2 + 188624 0.7 0.773523
Target:  5'- aGCACGA-GCGcUC--GGGCCGCAAGg -3'
miRNA:   3'- cUGUGCUgCGCaAGcaCCCGGCGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.