miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8977 3' -56.5 NC_002512.2 + 2817 0.68 0.885095
Target:  5'- gGACcCGGCGCGggCGcGGGCCcggacgacgGCGGGc -3'
miRNA:   3'- -CUGuGCUGCGCaaGCaCCCGG---------CGUUC- -5'
8977 3' -56.5 NC_002512.2 + 4592 0.73 0.658931
Target:  5'- gGAgGCGGCGC---CGcGGGCCGCGAGa -3'
miRNA:   3'- -CUgUGCUGCGcaaGCaCCCGGCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 5160 0.67 0.910116
Target:  5'- cGGCAgCGGCGCGacCG-GGGCgGCGGc -3'
miRNA:   3'- -CUGU-GCUGCGCaaGCaCCCGgCGUUc -5'
8977 3' -56.5 NC_002512.2 + 5492 0.71 0.736506
Target:  5'- cGugGCG-CGCGUccgCGccgGGGUCGCGAGg -3'
miRNA:   3'- -CugUGCuGCGCAa--GCa--CCCGGCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 6340 0.66 0.941038
Target:  5'- gGAC-CgGGCGCGgggcCGgcGGGCCGCGGGc -3'
miRNA:   3'- -CUGuG-CUGCGCaa--GCa-CCCGGCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 9735 0.67 0.910116
Target:  5'- aGCACGACGCccUUGgGGGCgGCGGa -3'
miRNA:   3'- cUGUGCUGCGcaAGCaCCCGgCGUUc -5'
8977 3' -56.5 NC_002512.2 + 10422 0.66 0.953514
Target:  5'- gGGCACGAcCGCGUcgucgccgUCGggcacgGGGgCGCGGa -3'
miRNA:   3'- -CUGUGCU-GCGCA--------AGCa-----CCCgGCGUUc -5'
8977 3' -56.5 NC_002512.2 + 12509 0.72 0.707824
Target:  5'- -cCACGACGCGUaCGUGcaccaGGCCGCc-- -3'
miRNA:   3'- cuGUGCUGCGCAaGCAC-----CCGGCGuuc -5'
8977 3' -56.5 NC_002512.2 + 13363 0.81 0.274509
Target:  5'- cGACucgGGCGCGUUCGUGGuGCCGCGGu -3'
miRNA:   3'- -CUGug-CUGCGCAAGCACC-CGGCGUUc -5'
8977 3' -56.5 NC_002512.2 + 13563 0.69 0.849163
Target:  5'- cGC-CGAcCGCG-UCG-GGGCCGCAGa -3'
miRNA:   3'- cUGuGCU-GCGCaAGCaCCCGGCGUUc -5'
8977 3' -56.5 NC_002512.2 + 14050 0.71 0.764425
Target:  5'- aGGCgGCGGCGCGUUCc--GGCCGgGAGg -3'
miRNA:   3'- -CUG-UGCUGCGCAAGcacCCGGCgUUC- -5'
8977 3' -56.5 NC_002512.2 + 20658 0.68 0.878308
Target:  5'- gGACAgGAgcuCGUGUUUGaccgugacGGGCCGCAGGc -3'
miRNA:   3'- -CUGUgCU---GCGCAAGCa-------CCCGGCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 21056 0.72 0.678603
Target:  5'- cGGCGCGGCGCGUgagggCGcacGGGCgGCGGu -3'
miRNA:   3'- -CUGUGCUGCGCAa----GCa--CCCGgCGUUc -5'
8977 3' -56.5 NC_002512.2 + 31809 0.66 0.936441
Target:  5'- aGACGCcggGGCGCGgUCGagGGGaCgCGCGAGa -3'
miRNA:   3'- -CUGUG---CUGCGCaAGCa-CCC-G-GCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 37710 0.68 0.881048
Target:  5'- -cCGCGGCGCaGgaCGgacagcgagggcagGGGCCGCGGGa -3'
miRNA:   3'- cuGUGCUGCG-CaaGCa-------------CCCGGCGUUC- -5'
8977 3' -56.5 NC_002512.2 + 41088 0.66 0.945415
Target:  5'- aGC-CGcCGCGaUCG-GGGCCGcCGAGg -3'
miRNA:   3'- cUGuGCuGCGCaAGCaCCCGGC-GUUC- -5'
8977 3' -56.5 NC_002512.2 + 44872 0.68 0.878308
Target:  5'- cGACgACGGCGCuGUacagCGgcaccGGGCCGCAGc -3'
miRNA:   3'- -CUG-UGCUGCG-CAa---GCa----CCCGGCGUUc -5'
8977 3' -56.5 NC_002512.2 + 46443 0.68 0.891672
Target:  5'- --aACGGCGUccuGacCGUGGGCCGCGc- -3'
miRNA:   3'- cugUGCUGCG---CaaGCACCCGGCGUuc -5'
8977 3' -56.5 NC_002512.2 + 47334 0.66 0.953514
Target:  5'- -cCGCGGCGCGUUCGa-GGCCuucCGGGu -3'
miRNA:   3'- cuGUGCUGCGCAAGCacCCGGc--GUUC- -5'
8977 3' -56.5 NC_002512.2 + 51000 0.73 0.649061
Target:  5'- aGCugGACGCGUUCGUGGagaacaacCCGCu-- -3'
miRNA:   3'- cUGugCUGCGCAAGCACCc-------GGCGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.