Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8977 | 3' | -56.5 | NC_002512.2 | + | 109033 | 0.68 | 0.891672 |
Target: 5'- -cCGCGGCGCGUUCGaGGGgaGgAAGu -3' miRNA: 3'- cuGUGCUGCGCAAGCaCCCggCgUUC- -5' |
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8977 | 3' | -56.5 | NC_002512.2 | + | 82973 | 0.7 | 0.791358 |
Target: 5'- cGCACGGCGCGgaagaCGUcGGCCGCc-- -3' miRNA: 3'- cUGUGCUGCGCaa---GCAcCCGGCGuuc -5' |
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8977 | 3' | -56.5 | NC_002512.2 | + | 13563 | 0.69 | 0.849163 |
Target: 5'- cGC-CGAcCGCG-UCG-GGGCCGCAGa -3' miRNA: 3'- cUGuGCU-GCGCaAGCaCCCGGCGUUc -5' |
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8977 | 3' | -56.5 | NC_002512.2 | + | 115192 | 0.68 | 0.871317 |
Target: 5'- aACGCGAUGg---UGUGGGCCGCGcAGg -3' miRNA: 3'- cUGUGCUGCgcaaGCACCCGGCGU-UC- -5' |
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8977 | 3' | -56.5 | NC_002512.2 | + | 126222 | 0.68 | 0.871317 |
Target: 5'- cGACGuCGAgGCGcUCGUGG-CCGcCGAGg -3' miRNA: 3'- -CUGU-GCUgCGCaAGCACCcGGC-GUUC- -5' |
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8977 | 3' | -56.5 | NC_002512.2 | + | 20658 | 0.68 | 0.878308 |
Target: 5'- gGACAgGAgcuCGUGUUUGaccgugacGGGCCGCAGGc -3' miRNA: 3'- -CUGUgCU---GCGCAAGCa-------CCCGGCGUUC- -5' |
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8977 | 3' | -56.5 | NC_002512.2 | + | 44872 | 0.68 | 0.878308 |
Target: 5'- cGACgACGGCGCuGUacagCGgcaccGGGCCGCAGc -3' miRNA: 3'- -CUG-UGCUGCG-CAa---GCa----CCCGGCGUUc -5' |
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8977 | 3' | -56.5 | NC_002512.2 | + | 37710 | 0.68 | 0.881048 |
Target: 5'- -cCGCGGCGCaGgaCGgacagcgagggcagGGGCCGCGGGa -3' miRNA: 3'- cuGUGCUGCG-CaaGCa-------------CCCGGCGUUC- -5' |
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8977 | 3' | -56.5 | NC_002512.2 | + | 2817 | 0.68 | 0.885095 |
Target: 5'- gGACcCGGCGCGggCGcGGGCCcggacgacgGCGGGc -3' miRNA: 3'- -CUGuGCUGCGCaaGCaCCCGG---------CGUUC- -5' |
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8977 | 3' | -56.5 | NC_002512.2 | + | 74202 | 0.7 | 0.773523 |
Target: 5'- --gGCGGCGaCGUcCGUGGGCuCGCGGu -3' miRNA: 3'- cugUGCUGC-GCAaGCACCCG-GCGUUc -5' |
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8977 | 3' | -56.5 | NC_002512.2 | + | 14050 | 0.71 | 0.764425 |
Target: 5'- aGGCgGCGGCGCGUUCc--GGCCGgGAGg -3' miRNA: 3'- -CUG-UGCUGCGCAAGcacCCGGCgUUC- -5' |
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8977 | 3' | -56.5 | NC_002512.2 | + | 111346 | 0.71 | 0.754291 |
Target: 5'- cGACGCGAcCGCGUUCGUuucccccGGacGCCGgAGGg -3' miRNA: 3'- -CUGUGCU-GCGCAAGCA-------CC--CGGCgUUC- -5' |
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8977 | 3' | -56.5 | NC_002512.2 | + | 85185 | 0.78 | 0.38942 |
Target: 5'- aGGCGCGACGgGUcccCGUGGGUCGCcGGg -3' miRNA: 3'- -CUGUGCUGCgCAa--GCACCCGGCGuUC- -5' |
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8977 | 3' | -56.5 | NC_002512.2 | + | 51000 | 0.73 | 0.649061 |
Target: 5'- aGCugGACGCGUUCGUGGagaacaacCCGCu-- -3' miRNA: 3'- cUGugCUGCGCAAGCACCc-------GGCGuuc -5' |
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8977 | 3' | -56.5 | NC_002512.2 | + | 4592 | 0.73 | 0.658931 |
Target: 5'- gGAgGCGGCGC---CGcGGGCCGCGAGa -3' miRNA: 3'- -CUgUGCUGCGcaaGCaCCCGGCGUUC- -5' |
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8977 | 3' | -56.5 | NC_002512.2 | + | 131022 | 0.72 | 0.678603 |
Target: 5'- cGACGCGcucgaGgGCG-UCG-GGGCCGCGGGg -3' miRNA: 3'- -CUGUGC-----UgCGCaAGCaCCCGGCGUUC- -5' |
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8977 | 3' | -56.5 | NC_002512.2 | + | 21056 | 0.72 | 0.678603 |
Target: 5'- cGGCGCGGCGCGUgagggCGcacGGGCgGCGGu -3' miRNA: 3'- -CUGUGCUGCGCAa----GCa--CCCGgCGUUc -5' |
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8977 | 3' | -56.5 | NC_002512.2 | + | 12509 | 0.72 | 0.707824 |
Target: 5'- -cCACGACGCGUaCGUGcaccaGGCCGCc-- -3' miRNA: 3'- cuGUGCUGCGCAaGCAC-----CCGGCGuuc -5' |
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8977 | 3' | -56.5 | NC_002512.2 | + | 78547 | 0.71 | 0.736506 |
Target: 5'- aACAUGGCGC---CGgccGGGCCGCGAGg -3' miRNA: 3'- cUGUGCUGCGcaaGCa--CCCGGCGUUC- -5' |
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8977 | 3' | -56.5 | NC_002512.2 | + | 5492 | 0.71 | 0.736506 |
Target: 5'- cGugGCG-CGCGUccgCGccgGGGUCGCGAGg -3' miRNA: 3'- -CugUGCuGCGCAa--GCa--CCCGGCGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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