miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8981 3' -52.2 NC_002512.2 + 79335 0.66 0.995406
Target:  5'- uCCCCUCccAGGUCgcgGcggcguacccucgcgGCCGCcGCGUGGAa -3'
miRNA:   3'- -GGGGAGu-UCCAG---U---------------UGGCGaUGUACUU- -5'
8981 3' -52.2 NC_002512.2 + 7231 0.66 0.995123
Target:  5'- gCCCCUCGGcccGGcCGGCCGUcGCGgcgGAGc -3'
miRNA:   3'- -GGGGAGUU---CCaGUUGGCGaUGUa--CUU- -5'
8981 3' -52.2 NC_002512.2 + 110697 0.66 0.99435
Target:  5'- gCCgCCgCAGGGcCAggGCCaGCUGCAUGGc -3'
miRNA:   3'- -GG-GGaGUUCCaGU--UGG-CGAUGUACUu -5'
8981 3' -52.2 NC_002512.2 + 56251 0.66 0.99435
Target:  5'- cCCCCggaccCGGGGUUcGCCGCcGCGgcgGAGg -3'
miRNA:   3'- -GGGGa----GUUCCAGuUGGCGaUGUa--CUU- -5'
8981 3' -52.2 NC_002512.2 + 40358 0.66 0.993482
Target:  5'- uCCCCUCGGGGcCugcGCCGCU-CGg--- -3'
miRNA:   3'- -GGGGAGUUCCaGu--UGGCGAuGUacuu -5'
8981 3' -52.2 NC_002512.2 + 152407 0.66 0.991427
Target:  5'- gCCCaCAGGG-CGAUCGCUGCGUc-- -3'
miRNA:   3'- gGGGaGUUCCaGUUGGCGAUGUAcuu -5'
8981 3' -52.2 NC_002512.2 + 119393 0.66 0.991427
Target:  5'- gCCCUgcugCAGGGcCGcguGCCGCUGCucgGGAg -3'
miRNA:   3'- -GGGGa---GUUCCaGU---UGGCGAUGua-CUU- -5'
8981 3' -52.2 NC_002512.2 + 15991 0.66 0.991427
Target:  5'- cCCCCggggagCAgaacacgagauAGGUCGGCCGCcGgGUGGGg -3'
miRNA:   3'- -GGGGa-----GU-----------UCCAGUUGGCGaUgUACUU- -5'
8981 3' -52.2 NC_002512.2 + 44248 0.66 0.991427
Target:  5'- cCCCCagGAGGUCGGacaGCUGCAc--- -3'
miRNA:   3'- -GGGGagUUCCAGUUgg-CGAUGUacuu -5'
8981 3' -52.2 NC_002512.2 + 96587 0.66 0.991312
Target:  5'- cCCgCCUCGGGGUCcucugggGACCGgaGCGcGGAg -3'
miRNA:   3'- -GG-GGAGUUCCAG-------UUGGCgaUGUaCUU- -5'
8981 3' -52.2 NC_002512.2 + 100809 0.67 0.990222
Target:  5'- gUCCUCGGGGUCGACCuggacgaggauGUUcaucgGCGUGAc -3'
miRNA:   3'- gGGGAGUUCCAGUUGG-----------CGA-----UGUACUu -5'
8981 3' -52.2 NC_002512.2 + 220002 0.67 0.985804
Target:  5'- cCCCCUCGcccggcGGGUCGagagGCCGCUcCGUc-- -3'
miRNA:   3'- -GGGGAGU------UCCAGU----UGGCGAuGUAcuu -5'
8981 3' -52.2 NC_002512.2 + 132151 0.68 0.979999
Target:  5'- gCCaCCUCGAGGUCGgugAgCGCggcguCGUGAGc -3'
miRNA:   3'- -GG-GGAGUUCCAGU---UgGCGau---GUACUU- -5'
8981 3' -52.2 NC_002512.2 + 213022 0.68 0.969725
Target:  5'- cCCUCUCGAGGUgCGuccGCCgGCUGCGgggGAu -3'
miRNA:   3'- -GGGGAGUUCCA-GU---UGG-CGAUGUa--CUu -5'
8981 3' -52.2 NC_002512.2 + 128740 0.68 0.969428
Target:  5'- cCCCCuucuggcUCAAGGUCuacGACgCGCUGCGcGAGc -3'
miRNA:   3'- -GGGG-------AGUUCCAG---UUG-GCGAUGUaCUU- -5'
8981 3' -52.2 NC_002512.2 + 178025 0.68 0.969128
Target:  5'- gCCCCUgGAGGUCuauaaaacaucCCGCgUAUGUGAGu -3'
miRNA:   3'- -GGGGAgUUCCAGuu---------GGCG-AUGUACUU- -5'
8981 3' -52.2 NC_002512.2 + 79466 0.69 0.956144
Target:  5'- uCCCgUCGGGG-CGACCGCgcgccCGUGGg -3'
miRNA:   3'- -GGGgAGUUCCaGUUGGCGau---GUACUu -5'
8981 3' -52.2 NC_002512.2 + 33717 0.69 0.952189
Target:  5'- cCCCCUCGGGcucgccccucGUCGACCGgaGCGaGGAg -3'
miRNA:   3'- -GGGGAGUUC----------CAGUUGGCgaUGUaCUU- -5'
8981 3' -52.2 NC_002512.2 + 8303 0.7 0.938916
Target:  5'- cCCCCUCcGGGUCGACggaGCaggGCcgGGAg -3'
miRNA:   3'- -GGGGAGuUCCAGUUGg--CGa--UGuaCUU- -5'
8981 3' -52.2 NC_002512.2 + 114568 0.7 0.937471
Target:  5'- gCCCaUCAGGGUCAgcagggucuggaucACCGuCUGCGUGc- -3'
miRNA:   3'- gGGG-AGUUCCAGU--------------UGGC-GAUGUACuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.