Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8982 | 3' | -51.3 | NC_002512.2 | + | 123020 | 0.7 | 0.973644 |
Target: 5'- cUGC-UCGugCgCGACGAGgaggUCGUCGAg -3' miRNA: 3'- -AUGcAGUugGaGCUGCUCa---AGCAGCU- -5' |
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8982 | 3' | -51.3 | NC_002512.2 | + | 95385 | 0.7 | 0.976203 |
Target: 5'- gGCGUaGACCUCGucgaagagccugGCGAGggCGUCGc -3' miRNA: 3'- aUGCAgUUGGAGC------------UGCUCaaGCAGCu -5' |
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8982 | 3' | -51.3 | NC_002512.2 | + | 59287 | 0.69 | 0.978575 |
Target: 5'- gACGUCGugCUCGACGGacUCGggUCGGg -3' miRNA: 3'- aUGCAGUugGAGCUGCUcaAGC--AGCU- -5' |
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8982 | 3' | -51.3 | NC_002512.2 | + | 167419 | 0.69 | 0.979473 |
Target: 5'- gGCGUCGAUCUCGugcggcggcacgccuGCGcGUUCGUCc- -3' miRNA: 3'- aUGCAGUUGGAGC---------------UGCuCAAGCAGcu -5' |
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8982 | 3' | -51.3 | NC_002512.2 | + | 190342 | 0.69 | 0.980767 |
Target: 5'- -uCGUCuACCUcuacgaCGACGGGggCGUCGGc -3' miRNA: 3'- auGCAGuUGGA------GCUGCUCaaGCAGCU- -5' |
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8982 | 3' | -51.3 | NC_002512.2 | + | 137800 | 0.69 | 0.982787 |
Target: 5'- cACGagAugCUCGACGAGaacugCGUCGu -3' miRNA: 3'- aUGCagUugGAGCUGCUCaa---GCAGCu -5' |
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8982 | 3' | -51.3 | NC_002512.2 | + | 14001 | 0.69 | 0.982787 |
Target: 5'- gACGcUCGACCUUuaaACGAGUgugugCGUCGGa -3' miRNA: 3'- aUGC-AGUUGGAGc--UGCUCAa----GCAGCU- -5' |
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8982 | 3' | -51.3 | NC_002512.2 | + | 84563 | 0.69 | 0.986342 |
Target: 5'- gGCGcUCGACCUCGACGuAGUUg--CGGa -3' miRNA: 3'- aUGC-AGUUGGAGCUGC-UCAAgcaGCU- -5' |
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8982 | 3' | -51.3 | NC_002512.2 | + | 100276 | 0.69 | 0.987894 |
Target: 5'- gACGgagcucggCGAgCggGGCGAGUUCGUCGGg -3' miRNA: 3'- aUGCa-------GUUgGagCUGCUCAAGCAGCU- -5' |
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8982 | 3' | -51.3 | NC_002512.2 | + | 161711 | 0.69 | 0.987894 |
Target: 5'- gACG-CGGCCggCGACGGGaUCGUCu- -3' miRNA: 3'- aUGCaGUUGGa-GCUGCUCaAGCAGcu -5' |
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8982 | 3' | -51.3 | NC_002512.2 | + | 103048 | 0.68 | 0.989305 |
Target: 5'- gGCGaCGACCgCGACGAGcgCGaCGAc -3' miRNA: 3'- aUGCaGUUGGaGCUGCUCaaGCaGCU- -5' |
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8982 | 3' | -51.3 | NC_002512.2 | + | 95380 | 0.68 | 0.989305 |
Target: 5'- gACGUCGACgUCGGCGuGGUaCGUgacCGAg -3' miRNA: 3'- aUGCAGUUGgAGCUGC-UCAaGCA---GCU- -5' |
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8982 | 3' | -51.3 | NC_002512.2 | + | 156306 | 0.68 | 0.989305 |
Target: 5'- --aGUCGGCCgugUCGcACGGGgagcUCGUCGAg -3' miRNA: 3'- augCAGUUGG---AGC-UGCUCa---AGCAGCU- -5' |
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8982 | 3' | -51.3 | NC_002512.2 | + | 134143 | 0.68 | 0.990585 |
Target: 5'- gACGaUCAACC-CgGACGGGUaccCGUCGAc -3' miRNA: 3'- aUGC-AGUUGGaG-CUGCUCAa--GCAGCU- -5' |
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8982 | 3' | -51.3 | NC_002512.2 | + | 188117 | 0.68 | 0.990585 |
Target: 5'- cGCGUCGACUUCGAUuucaacgUCGUCGc -3' miRNA: 3'- aUGCAGUUGGAGCUGcuca---AGCAGCu -5' |
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8982 | 3' | -51.3 | NC_002512.2 | + | 156054 | 0.68 | 0.991293 |
Target: 5'- -uCGUCGACacggcgaggcucaUCGACGccgggcgccggcAGUUCGUCGAg -3' miRNA: 3'- auGCAGUUGg------------AGCUGC------------UCAAGCAGCU- -5' |
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8982 | 3' | -51.3 | NC_002512.2 | + | 102148 | 0.68 | 0.991741 |
Target: 5'- cUACGgccgCGACCgCGGCuGGG-UCGUCGAu -3' miRNA: 3'- -AUGCa---GUUGGaGCUG-CUCaAGCAGCU- -5' |
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8982 | 3' | -51.3 | NC_002512.2 | + | 100471 | 0.68 | 0.992171 |
Target: 5'- cGCGUUcucggucguggcccgGACCUUGGgGAGgccgcggUCGUCGAg -3' miRNA: 3'- aUGCAG---------------UUGGAGCUgCUCa------AGCAGCU- -5' |
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8982 | 3' | -51.3 | NC_002512.2 | + | 16567 | 0.68 | 0.992481 |
Target: 5'- -uCGUCGggcaGCCcguaggccaggaaaUCGACGAGgUCGUCGGc -3' miRNA: 3'- auGCAGU----UGG--------------AGCUGCUCaAGCAGCU- -5' |
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8982 | 3' | -51.3 | NC_002512.2 | + | 135333 | 0.68 | 0.992583 |
Target: 5'- gGCGUCAGCCgCGcCGGGgugcugcuggcCGUCGAc -3' miRNA: 3'- aUGCAGUUGGaGCuGCUCaa---------GCAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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