miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 3' -51.3 NC_002512.2 + 194475 1.08 0.016272
Target:  5'- cUACGUCAACCUCGACGAGUUCGUCGAg -3'
miRNA:   3'- -AUGCAGUUGGAGCUGCUCAAGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 184026 0.8 0.557289
Target:  5'- cUACGUCGACCUCGGuccgcugguCGAGUUCGUgUGAg -3'
miRNA:   3'- -AUGCAGUUGGAGCU---------GCUCAAGCA-GCU- -5'
8982 3' -51.3 NC_002512.2 + 144474 0.78 0.678933
Target:  5'- gGCGUcCAACCgCGugGAGUUCGUCc- -3'
miRNA:   3'- aUGCA-GUUGGaGCugCUCAAGCAGcu -5'
8982 3' -51.3 NC_002512.2 + 18641 0.77 0.748215
Target:  5'- gGCGUCGacggccGCCUCGACGcAGUcguaguacUCGUCGGa -3'
miRNA:   3'- aUGCAGU------UGGAGCUGC-UCA--------AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 155470 0.76 0.785783
Target:  5'- -cCGUCGACC---GCGAGUUCGUCGGc -3'
miRNA:   3'- auGCAGUUGGagcUGCUCAAGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 32227 0.75 0.821163
Target:  5'- gGCGUCcACCUCGucgggccaGAGUUUGUCGGu -3'
miRNA:   3'- aUGCAGuUGGAGCug------CUCAAGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 212196 0.75 0.829603
Target:  5'- aACGUCAcGCugCUCGACGAGgagaUCGUCGGc -3'
miRNA:   3'- aUGCAGU-UG--GAGCUGCUCa---AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 140853 0.74 0.876258
Target:  5'- gACGagAuCCUCGugGAGUUCGcUCGGa -3'
miRNA:   3'- aUGCagUuGGAGCugCUCAAGC-AGCU- -5'
8982 3' -51.3 NC_002512.2 + 108750 0.73 0.909276
Target:  5'- gGCGUCucggccGCCgUCGACGGGUUCGgguacCGAu -3'
miRNA:   3'- aUGCAGu-----UGG-AGCUGCUCAAGCa----GCU- -5'
8982 3' -51.3 NC_002512.2 + 95554 0.72 0.926309
Target:  5'- aGC-UCGGCCgCGGCGAGUcCGUCGGc -3'
miRNA:   3'- aUGcAGUUGGaGCUGCUCAaGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 220900 0.72 0.931513
Target:  5'- -cCGaCGACCUCuACGAGUUCGUCc- -3'
miRNA:   3'- auGCaGUUGGAGcUGCUCAAGCAGcu -5'
8982 3' -51.3 NC_002512.2 + 35242 0.72 0.936481
Target:  5'- -cCGUCGACCUCgGACGGGUgccccgUGUCa- -3'
miRNA:   3'- auGCAGUUGGAG-CUGCUCAa-----GCAGcu -5'
8982 3' -51.3 NC_002512.2 + 115365 0.72 0.936481
Target:  5'- gUGCGUCAGCaggUCGACcGGgaCGUCGAu -3'
miRNA:   3'- -AUGCAGUUGg--AGCUGcUCaaGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 137539 0.72 0.941212
Target:  5'- cGCGUCcGCggCGACGGGUUCGgucgCGGa -3'
miRNA:   3'- aUGCAGuUGgaGCUGCUCAAGCa---GCU- -5'
8982 3' -51.3 NC_002512.2 + 9131 0.71 0.955562
Target:  5'- gACGUCGGCCUCGACggcccagcgcuccauGAGguggagGUCGAa -3'
miRNA:   3'- aUGCAGUUGGAGCUG---------------CUCaag---CAGCU- -5'
8982 3' -51.3 NC_002512.2 + 106849 0.71 0.957821
Target:  5'- gUGCaGUCGAUCUCGACGAccuccUCGUCGc -3'
miRNA:   3'- -AUG-CAGUUGGAGCUGCUca---AGCAGCu -5'
8982 3' -51.3 NC_002512.2 + 102292 0.7 0.96478
Target:  5'- cGCGUCGACCgccagggCGACGucgcggacGGUcCGUCGGg -3'
miRNA:   3'- aUGCAGUUGGa------GCUGC--------UCAaGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 141211 0.7 0.970892
Target:  5'- aGCG-CAGCCggGGCGGGUUCGggCGGu -3'
miRNA:   3'- aUGCaGUUGGagCUGCUCAAGCa-GCU- -5'
8982 3' -51.3 NC_002512.2 + 126475 0.7 0.970892
Target:  5'- gACGgCGuCUUCGACGAGUUCGUgGc -3'
miRNA:   3'- aUGCaGUuGGAGCUGCUCAAGCAgCu -5'
8982 3' -51.3 NC_002512.2 + 36247 0.7 0.970892
Target:  5'- uUAUGaCGACCUCGGCGg---CGUCGAu -3'
miRNA:   3'- -AUGCaGUUGGAGCUGCucaaGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.