miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 3' -51.3 NC_002512.2 + 130548 0.67 0.99455
Target:  5'- -cCGUCcggauGCUcgUCGAgGAGUUCGUCGu -3'
miRNA:   3'- auGCAGu----UGG--AGCUgCUCAAGCAGCu -5'
8982 3' -51.3 NC_002512.2 + 100276 0.69 0.987894
Target:  5'- gACGgagcucggCGAgCggGGCGAGUUCGUCGGg -3'
miRNA:   3'- aUGCa-------GUUgGagCUGCUCAAGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 103048 0.68 0.989305
Target:  5'- gGCGaCGACCgCGACGAGcgCGaCGAc -3'
miRNA:   3'- aUGCaGUUGGaGCUGCUCaaGCaGCU- -5'
8982 3' -51.3 NC_002512.2 + 95380 0.68 0.989305
Target:  5'- gACGUCGACgUCGGCGuGGUaCGUgacCGAg -3'
miRNA:   3'- aUGCAGUUGgAGCUGC-UCAaGCA---GCU- -5'
8982 3' -51.3 NC_002512.2 + 102148 0.68 0.991741
Target:  5'- cUACGgccgCGACCgCGGCuGGG-UCGUCGAu -3'
miRNA:   3'- -AUGCa---GUUGGaGCUG-CUCaAGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 16567 0.68 0.992481
Target:  5'- -uCGUCGggcaGCCcguaggccaggaaaUCGACGAGgUCGUCGGc -3'
miRNA:   3'- auGCAGU----UGG--------------AGCUGCUCaAGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 135333 0.68 0.992583
Target:  5'- gGCGUCAGCCgCGcCGGGgugcugcuggcCGUCGAc -3'
miRNA:   3'- aUGCAGUUGGaGCuGCUCaa---------GCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 11536 0.67 0.99455
Target:  5'- aACGggaUCGACCUgGACGAGgaCGagGAg -3'
miRNA:   3'- aUGC---AGUUGGAgCUGCUCaaGCagCU- -5'
8982 3' -51.3 NC_002512.2 + 121519 0.67 0.99455
Target:  5'- aACGUCAuCCUCGGgGAGcUCcggcgcgccgggGUCGAg -3'
miRNA:   3'- aUGCAGUuGGAGCUgCUCaAG------------CAGCU- -5'
8982 3' -51.3 NC_002512.2 + 84563 0.69 0.986342
Target:  5'- gGCGcUCGACCUCGACGuAGUUg--CGGa -3'
miRNA:   3'- aUGC-AGUUGGAGCUGC-UCAAgcaGCU- -5'
8982 3' -51.3 NC_002512.2 + 59287 0.69 0.978575
Target:  5'- gACGUCGugCUCGACGGacUCGggUCGGg -3'
miRNA:   3'- aUGCAGUugGAGCUGCUcaAGC--AGCU- -5'
8982 3' -51.3 NC_002512.2 + 123020 0.7 0.973644
Target:  5'- cUGC-UCGugCgCGACGAGgaggUCGUCGAg -3'
miRNA:   3'- -AUGcAGUugGaGCUGCUCa---AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 32227 0.75 0.821163
Target:  5'- gGCGUCcACCUCGucgggccaGAGUUUGUCGGu -3'
miRNA:   3'- aUGCAGuUGGAGCug------CUCAAGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 140853 0.74 0.876258
Target:  5'- gACGagAuCCUCGugGAGUUCGcUCGGa -3'
miRNA:   3'- aUGCagUuGGAGCugCUCAAGC-AGCU- -5'
8982 3' -51.3 NC_002512.2 + 108750 0.73 0.909276
Target:  5'- gGCGUCucggccGCCgUCGACGGGUUCGgguacCGAu -3'
miRNA:   3'- aUGCAGu-----UGG-AGCUGCUCAAGCa----GCU- -5'
8982 3' -51.3 NC_002512.2 + 115365 0.72 0.936481
Target:  5'- gUGCGUCAGCaggUCGACcGGgaCGUCGAu -3'
miRNA:   3'- -AUGCAGUUGg--AGCUGcUCaaGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 9131 0.71 0.955562
Target:  5'- gACGUCGGCCUCGACggcccagcgcuccauGAGguggagGUCGAa -3'
miRNA:   3'- aUGCAGUUGGAGCUG---------------CUCaag---CAGCU- -5'
8982 3' -51.3 NC_002512.2 + 36247 0.7 0.970892
Target:  5'- uUAUGaCGACCUCGGCGg---CGUCGAu -3'
miRNA:   3'- -AUGCaGUUGGAGCUGCucaaGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 126475 0.7 0.970892
Target:  5'- gACGgCGuCUUCGACGAGUUCGUgGc -3'
miRNA:   3'- aUGCaGUuGGAGCUGCUCAAGCAgCu -5'
8982 3' -51.3 NC_002512.2 + 141211 0.7 0.970892
Target:  5'- aGCG-CAGCCggGGCGGGUUCGggCGGu -3'
miRNA:   3'- aUGCaGUUGGagCUGCUCAAGCa-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.