miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 3' -51.3 NC_002512.2 + 4237 0.67 0.99595
Target:  5'- gACGUCgAGCCcCGACGGGUgguUCGGg -3'
miRNA:   3'- aUGCAG-UUGGaGCUGCUCAagcAGCU- -5'
8982 3' -51.3 NC_002512.2 + 5211 0.66 0.998754
Target:  5'- cGCGggcCAGCCgacggCGGCGGGaaaGUCGAa -3'
miRNA:   3'- aUGCa--GUUGGa----GCUGCUCaagCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 7402 0.66 0.998504
Target:  5'- cGCGUCGACUgcaaUGGCaacacgGAGUccaUCGUCGAa -3'
miRNA:   3'- aUGCAGUUGGa---GCUG------CUCA---AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 9131 0.71 0.955562
Target:  5'- gACGUCGGCCUCGACggcccagcgcuccauGAGguggagGUCGAa -3'
miRNA:   3'- aUGCAGUUGGAGCUG---------------CUCaag---CAGCU- -5'
8982 3' -51.3 NC_002512.2 + 11536 0.67 0.99455
Target:  5'- aACGggaUCGACCUgGACGAGgaCGagGAg -3'
miRNA:   3'- aUGC---AGUUGGAgCUGCUCaaGCagCU- -5'
8982 3' -51.3 NC_002512.2 + 14001 0.69 0.982787
Target:  5'- gACGcUCGACCUUuaaACGAGUgugugCGUCGGa -3'
miRNA:   3'- aUGC-AGUUGGAGc--UGCUCAa----GCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 16567 0.68 0.992481
Target:  5'- -uCGUCGggcaGCCcguaggccaggaaaUCGACGAGgUCGUCGGc -3'
miRNA:   3'- auGCAGU----UGG--------------AGCUGCUCaAGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 18641 0.77 0.748215
Target:  5'- gGCGUCGacggccGCCUCGACGcAGUcguaguacUCGUCGGa -3'
miRNA:   3'- aUGCAGU------UGGAGCUGC-UCA--------AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 32227 0.75 0.821163
Target:  5'- gGCGUCcACCUCGucgggccaGAGUUUGUCGGu -3'
miRNA:   3'- aUGCAGuUGGAGCug------CUCAAGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 35242 0.72 0.936481
Target:  5'- -cCGUCGACCUCgGACGGGUgccccgUGUCa- -3'
miRNA:   3'- auGCAGUUGGAG-CUGCUCAa-----GCAGcu -5'
8982 3' -51.3 NC_002512.2 + 36247 0.7 0.970892
Target:  5'- uUAUGaCGACCUCGGCGg---CGUCGAu -3'
miRNA:   3'- -AUGCaGUUGGAGCUGCucaaGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 59287 0.69 0.978575
Target:  5'- gACGUCGugCUCGACGGacUCGggUCGGg -3'
miRNA:   3'- aUGCAGUugGAGCUGCUcaAGC--AGCU- -5'
8982 3' -51.3 NC_002512.2 + 67744 0.66 0.998213
Target:  5'- gGCGUgcCGGCCUCG-CGAGccggggUCGUCu- -3'
miRNA:   3'- aUGCA--GUUGGAGCuGCUCa-----AGCAGcu -5'
8982 3' -51.3 NC_002512.2 + 70828 0.66 0.997609
Target:  5'- cGCGUCGuccGCCUCGccccgggACGAGaugccgcggagaagUCGUCGGu -3'
miRNA:   3'- aUGCAGU---UGGAGC-------UGCUCa-------------AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 83682 0.67 0.99704
Target:  5'- -uCGcCAGCCUCuuGACGG--UCGUCGAg -3'
miRNA:   3'- auGCaGUUGGAG--CUGCUcaAGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 84563 0.69 0.986342
Target:  5'- gGCGcUCGACCUCGACGuAGUUg--CGGa -3'
miRNA:   3'- aUGC-AGUUGGAGCUGC-UCAAgcaGCU- -5'
8982 3' -51.3 NC_002512.2 + 85950 0.67 0.99595
Target:  5'- gACGUCGucauCCugaagcucgucgUCGGCGAGUUCGcccucUCGGa -3'
miRNA:   3'- aUGCAGUu---GG------------AGCUGCUCAAGC-----AGCU- -5'
8982 3' -51.3 NC_002512.2 + 88992 0.67 0.995292
Target:  5'- -uCGUCGACC-CGgagcGCGGGgaCGUCGGg -3'
miRNA:   3'- auGCAGUUGGaGC----UGCUCaaGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 91718 0.67 0.99704
Target:  5'- cACG-CAGCC-CGGCGGGUgcggacaguUCGUCa- -3'
miRNA:   3'- aUGCaGUUGGaGCUGCUCA---------AGCAGcu -5'
8982 3' -51.3 NC_002512.2 + 95380 0.68 0.989305
Target:  5'- gACGUCGACgUCGGCGuGGUaCGUgacCGAg -3'
miRNA:   3'- aUGCAGUUGgAGCUGC-UCAaGCA---GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.