Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 192385 | 1.11 | 0.04411 |
Target: 5'- gCUGCGAAUAAAGACAGACGCGUUUACc -3' miRNA: 3'- -GACGCUUAUUUCUGUCUGCGCAAAUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 224142 | 0.79 | 0.947864 |
Target: 5'- -cGCGccgGGAGGCGGACGCGUgagGCg -3' miRNA: 3'- gaCGCuuaUUUCUGUCUGCGCAaa-UG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 155337 | 0.77 | 0.978728 |
Target: 5'- -cGCGGcgGAccAGACAGACGCGUa--- -3' miRNA: 3'- gaCGCUuaUU--UCUGUCUGCGCAaaug -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 228719 | 0.77 | 0.978728 |
Target: 5'- gUGCGAAgaagaacugcGGAGACGGACGCGgacgGCg -3' miRNA: 3'- gACGCUUa---------UUUCUGUCUGCGCaaa-UG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 227899 | 0.73 | 0.998257 |
Target: 5'- -gGCGAGUccgaggccGGAGACGGACGCGc---- -3' miRNA: 3'- gaCGCUUA--------UUUCUGUCUGCGCaaaug -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 129843 | 0.73 | 0.998558 |
Target: 5'- -cGCG-AUGGAGGCGGAgGCGgagGCg -3' miRNA: 3'- gaCGCuUAUUUCUGUCUgCGCaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 22395 | 0.73 | 0.998814 |
Target: 5'- -cGCGGAUccGGAGACGGGCGCcgagACg -3' miRNA: 3'- gaCGCUUA--UUUCUGUCUGCGcaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 9407 | 0.72 | 0.999031 |
Target: 5'- gCUGCGggU-GAGGCGGACGUag--GCg -3' miRNA: 3'- -GACGCuuAuUUCUGUCUGCGcaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 25654 | 0.72 | 0.999489 |
Target: 5'- gCUGCGAGcguUGGAGAcCAGACGC---UGCg -3' miRNA: 3'- -GACGCUU---AUUUCU-GUCUGCGcaaAUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 82120 | 0.72 | 0.999593 |
Target: 5'- -cGCGAGUcgGGACGGcCGCGcugGCg -3' miRNA: 3'- gaCGCUUAuuUCUGUCuGCGCaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 103091 | 0.72 | 0.999593 |
Target: 5'- -gGCGAucccGGGGACGGGCGCGgc-ACg -3' miRNA: 3'- gaCGCUua--UUUCUGUCUGCGCaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 98094 | 0.71 | 0.999746 |
Target: 5'- -aGCGGAUGAcggGGACGG-CGCGgg-ACg -3' miRNA: 3'- gaCGCUUAUU---UCUGUCuGCGCaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 57940 | 0.7 | 0.999882 |
Target: 5'- -aGCGGGagauAGACGGGCGCGgcgcgGCg -3' miRNA: 3'- gaCGCUUauu-UCUGUCUGCGCaaa--UG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 98169 | 0.7 | 0.999882 |
Target: 5'- -cGCGGucu-GGACGGGCGCGgcgACc -3' miRNA: 3'- gaCGCUuauuUCUGUCUGCGCaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 228517 | 0.7 | 0.99991 |
Target: 5'- -cGCGGAggAGAGACGGAgGCGa---- -3' miRNA: 3'- gaCGCUUa-UUUCUGUCUgCGCaaaug -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 31238 | 0.7 | 0.99991 |
Target: 5'- gCUGCGuuucGUGAGGGCgcugauGGACGCGgacgugUACg -3' miRNA: 3'- -GACGCu---UAUUUCUG------UCUGCGCaa----AUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 57507 | 0.7 | 0.999919 |
Target: 5'- gUGCaGGUAGAGACAGgagagguugcgggacACGCGUUccaUACa -3' miRNA: 3'- gACGcUUAUUUCUGUC---------------UGCGCAA---AUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 55110 | 0.7 | 0.999932 |
Target: 5'- cCUGgaCGAGUucgcGGAGACGGACGCGg---- -3' miRNA: 3'- -GAC--GCUUA----UUUCUGUCUGCGCaaaug -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 52808 | 0.69 | 0.999972 |
Target: 5'- -aGCGGGggcuGACGGACGCGg---- -3' miRNA: 3'- gaCGCUUauuuCUGUCUGCGCaaaug -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 88683 | 0.69 | 0.999972 |
Target: 5'- gUGUGggUAucG-CGGACGCGgg-ACg -3' miRNA: 3'- gACGCuuAUuuCuGUCUGCGCaaaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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