miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8983 3' -44.7 NC_002512.2 + 4978 0.67 0.999999
Target:  5'- -cGCGAcgGAGGugAGACgGCGa---- -3'
miRNA:   3'- gaCGCUuaUUUCugUCUG-CGCaaaug -5'
8983 3' -44.7 NC_002512.2 + 9407 0.72 0.999031
Target:  5'- gCUGCGggU-GAGGCGGACGUag--GCg -3'
miRNA:   3'- -GACGCuuAuUUCUGUCUGCGcaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 22395 0.73 0.998814
Target:  5'- -cGCGGAUccGGAGACGGGCGCcgagACg -3'
miRNA:   3'- gaCGCUUA--UUUCUGUCUGCGcaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 25654 0.72 0.999489
Target:  5'- gCUGCGAGcguUGGAGAcCAGACGC---UGCg -3'
miRNA:   3'- -GACGCUU---AUUUCU-GUCUGCGcaaAUG- -5'
8983 3' -44.7 NC_002512.2 + 31238 0.7 0.99991
Target:  5'- gCUGCGuuucGUGAGGGCgcugauGGACGCGgacgugUACg -3'
miRNA:   3'- -GACGCu---UAUUUCUG------UCUGCGCaa----AUG- -5'
8983 3' -44.7 NC_002512.2 + 32705 0.66 1
Target:  5'- -aGCGGguccAUGAGGACgaagAGGCGCGggUGg -3'
miRNA:   3'- gaCGCU----UAUUUCUG----UCUGCGCaaAUg -5'
8983 3' -44.7 NC_002512.2 + 52808 0.69 0.999972
Target:  5'- -aGCGGGggcuGACGGACGCGg---- -3'
miRNA:   3'- gaCGCUUauuuCUGUCUGCGCaaaug -5'
8983 3' -44.7 NC_002512.2 + 53536 0.66 1
Target:  5'- -cGCGAcUGGAGACggAGACGCuGgagACg -3'
miRNA:   3'- gaCGCUuAUUUCUG--UCUGCG-CaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 55110 0.7 0.999932
Target:  5'- cCUGgaCGAGUucgcGGAGACGGACGCGg---- -3'
miRNA:   3'- -GAC--GCUUA----UUUCUGUCUGCGCaaaug -5'
8983 3' -44.7 NC_002512.2 + 57507 0.7 0.999919
Target:  5'- gUGCaGGUAGAGACAGgagagguugcgggacACGCGUUccaUACa -3'
miRNA:   3'- gACGcUUAUUUCUGUC---------------UGCGCAA---AUG- -5'
8983 3' -44.7 NC_002512.2 + 57940 0.7 0.999882
Target:  5'- -aGCGGGagauAGACGGGCGCGgcgcgGCg -3'
miRNA:   3'- gaCGCUUauu-UCUGUCUGCGCaaa--UG- -5'
8983 3' -44.7 NC_002512.2 + 67707 0.66 1
Target:  5'- aUGUGuGUGAccGACGGACGCGgccGCu -3'
miRNA:   3'- gACGCuUAUUu-CUGUCUGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 74650 0.66 1
Target:  5'- -cGCGAcgGgcGGGACGGcCGCGg--GCg -3'
miRNA:   3'- gaCGCUuaU--UUCUGUCuGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 74917 0.66 1
Target:  5'- -cGCGGAggcccGGAGGCGGAuCGCGg--ACc -3'
miRNA:   3'- gaCGCUUa----UUUCUGUCU-GCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 75549 0.68 0.999998
Target:  5'- -cGUGGcgGAGGACGacGACGCGg--ACg -3'
miRNA:   3'- gaCGCUuaUUUCUGU--CUGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 82120 0.72 0.999593
Target:  5'- -cGCGAGUcgGGACGGcCGCGcugGCg -3'
miRNA:   3'- gaCGCUUAuuUCUGUCuGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 86980 0.66 1
Target:  5'- -aGCGGccGUGAuGugGGACGCGgagaacUACa -3'
miRNA:   3'- gaCGCU--UAUUuCugUCUGCGCaa----AUG- -5'
8983 3' -44.7 NC_002512.2 + 88683 0.69 0.999972
Target:  5'- gUGUGggUAucG-CGGACGCGgg-ACg -3'
miRNA:   3'- gACGCuuAUuuCuGUCUGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 89383 0.69 0.999989
Target:  5'- aCUGCGAGUAGuuGCcGAUGCGg--GCc -3'
miRNA:   3'- -GACGCUUAUUucUGuCUGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 89451 0.66 1
Target:  5'- gCUGUGucgGAAGGCGagcGACGCGg--ACg -3'
miRNA:   3'- -GACGCuuaUUUCUGU---CUGCGCaaaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.