miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8983 3' -44.7 NC_002512.2 + 228721 0.66 1
Target:  5'- -cGCGGggGAAGACGuGAUGCGg---- -3'
miRNA:   3'- gaCGCUuaUUUCUGU-CUGCGCaaaug -5'
8983 3' -44.7 NC_002512.2 + 228719 0.77 0.978728
Target:  5'- gUGCGAAgaagaacugcGGAGACGGACGCGgacgGCg -3'
miRNA:   3'- gACGCUUa---------UUUCUGUCUGCGCaaa-UG- -5'
8983 3' -44.7 NC_002512.2 + 228517 0.7 0.99991
Target:  5'- -cGCGGAggAGAGACGGAgGCGa---- -3'
miRNA:   3'- gaCGCUUa-UUUCUGUCUgCGCaaaug -5'
8983 3' -44.7 NC_002512.2 + 227899 0.73 0.998257
Target:  5'- -gGCGAGUccgaggccGGAGACGGACGCGc---- -3'
miRNA:   3'- gaCGCUUA--------UUUCUGUCUGCGCaaaug -5'
8983 3' -44.7 NC_002512.2 + 227610 0.68 0.999998
Target:  5'- -aGCGGccgGAGGGCGGGCgGCGgcgGCg -3'
miRNA:   3'- gaCGCUua-UUUCUGUCUG-CGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 227129 0.67 1
Target:  5'- -aGCGggUGcAGAcCAGACGCa----- -3'
miRNA:   3'- gaCGCuuAUuUCU-GUCUGCGcaaaug -5'
8983 3' -44.7 NC_002512.2 + 226923 0.66 1
Target:  5'- -gGCGAAggggcgGAAGAC-GAUGCGg--GCa -3'
miRNA:   3'- gaCGCUUa-----UUUCUGuCUGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 224180 0.67 0.999999
Target:  5'- -cGCGGAgagagAGAGACacacacacacGGACGCGgggACg -3'
miRNA:   3'- gaCGCUUa----UUUCUG----------UCUGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 224142 0.79 0.947864
Target:  5'- -cGCGccgGGAGGCGGACGCGUgagGCg -3'
miRNA:   3'- gaCGCuuaUUUCUGUCUGCGCAaa-UG- -5'
8983 3' -44.7 NC_002512.2 + 196830 0.68 0.999994
Target:  5'- uCUGCGAcgGGcugcggcGGAUGGACGcCGUcUACg -3'
miRNA:   3'- -GACGCUuaUU-------UCUGUCUGC-GCAaAUG- -5'
8983 3' -44.7 NC_002512.2 + 196298 0.67 0.999999
Target:  5'- aUGCGggUGAGGACccagcGGcCGCGg---- -3'
miRNA:   3'- gACGCuuAUUUCUG-----UCuGCGCaaaug -5'
8983 3' -44.7 NC_002512.2 + 192385 1.11 0.04411
Target:  5'- gCUGCGAAUAAAGACAGACGCGUUUACc -3'
miRNA:   3'- -GACGCUUAUUUCUGUCUGCGCAAAUG- -5'
8983 3' -44.7 NC_002512.2 + 192007 0.68 0.999992
Target:  5'- gCUGCGGAaGAccguccuGGCGGGCGCGggaGCg -3'
miRNA:   3'- -GACGCUUaUUu------CUGUCUGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 191032 0.67 0.999999
Target:  5'- cCUGCGAGgcGGGGCGcGGCGCa----- -3'
miRNA:   3'- -GACGCUUauUUCUGU-CUGCGcaaaug -5'
8983 3' -44.7 NC_002512.2 + 175271 0.66 1
Target:  5'- -gGCGggUAGcuGGCGGcCGCGUacACg -3'
miRNA:   3'- gaCGCuuAUUu-CUGUCuGCGCAaaUG- -5'
8983 3' -44.7 NC_002512.2 + 163069 0.68 0.999998
Target:  5'- gUGCGAGUGGAaACGGugGCa----- -3'
miRNA:   3'- gACGCUUAUUUcUGUCugCGcaaaug -5'
8983 3' -44.7 NC_002512.2 + 161794 0.66 1
Target:  5'- uUGCGAuGUGAAG-CAGAgGCGgaUGa -3'
miRNA:   3'- gACGCU-UAUUUCuGUCUgCGCaaAUg -5'
8983 3' -44.7 NC_002512.2 + 161696 0.67 0.999999
Target:  5'- -cGCGug-GAAGAUggAGACGCGgccgGCg -3'
miRNA:   3'- gaCGCuuaUUUCUG--UCUGCGCaaa-UG- -5'
8983 3' -44.7 NC_002512.2 + 157006 0.68 0.999996
Target:  5'- gCUGCGGAgcagcguGAGuaAGACGCGgagUUGCu -3'
miRNA:   3'- -GACGCUUau-----UUCugUCUGCGCa--AAUG- -5'
8983 3' -44.7 NC_002512.2 + 155337 0.77 0.978728
Target:  5'- -cGCGGcgGAccAGACAGACGCGUa--- -3'
miRNA:   3'- gaCGCUuaUU--UCUGUCUGCGCAaaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.