Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 32705 | 0.66 | 1 |
Target: 5'- -aGCGGguccAUGAGGACgaagAGGCGCGggUGg -3' miRNA: 3'- gaCGCU----UAUUUCUG----UCUGCGCaaAUg -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 88683 | 0.69 | 0.999972 |
Target: 5'- gUGUGggUAucG-CGGACGCGgg-ACg -3' miRNA: 3'- gACGCuuAUuuCuGUCUGCGCaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 52808 | 0.69 | 0.999972 |
Target: 5'- -aGCGGGggcuGACGGACGCGg---- -3' miRNA: 3'- gaCGCUUauuuCUGUCUGCGCaaaug -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 157006 | 0.68 | 0.999996 |
Target: 5'- gCUGCGGAgcagcguGAGuaAGACGCGgagUUGCu -3' miRNA: 3'- -GACGCUUau-----UUCugUCUGCGCa--AAUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 131283 | 0.68 | 0.999996 |
Target: 5'- cCUGCGGA---AGAgAGACGCGc---- -3' miRNA: 3'- -GACGCUUauuUCUgUCUGCGCaaaug -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 97382 | 0.68 | 0.999997 |
Target: 5'- -gGCGGccGGAGACGGGgGCGg--GCg -3' miRNA: 3'- gaCGCUuaUUUCUGUCUgCGCaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 147483 | 0.68 | 0.999998 |
Target: 5'- -cGCGGGcgcUGcGGACGGGCGCGaccgGCg -3' miRNA: 3'- gaCGCUU---AUuUCUGUCUGCGCaaa-UG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 4978 | 0.67 | 0.999999 |
Target: 5'- -cGCGAcgGAGGugAGACgGCGa---- -3' miRNA: 3'- gaCGCUuaUUUCugUCUG-CGCaaaug -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 152444 | 0.67 | 1 |
Target: 5'- -gGCGAuuuc-GACGGGCGCGcg-GCg -3' miRNA: 3'- gaCGCUuauuuCUGUCUGCGCaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 55110 | 0.7 | 0.999932 |
Target: 5'- cCUGgaCGAGUucgcGGAGACGGACGCGg---- -3' miRNA: 3'- -GAC--GCUUA----UUUCUGUCUGCGCaaaug -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 57507 | 0.7 | 0.999919 |
Target: 5'- gUGCaGGUAGAGACAGgagagguugcgggacACGCGUUccaUACa -3' miRNA: 3'- gACGcUUAUUUCUGUC---------------UGCGCAA---AUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 31238 | 0.7 | 0.99991 |
Target: 5'- gCUGCGuuucGUGAGGGCgcugauGGACGCGgacgugUACg -3' miRNA: 3'- -GACGCu---UAUUUCUG------UCUGCGCaa----AUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 228719 | 0.77 | 0.978728 |
Target: 5'- gUGCGAAgaagaacugcGGAGACGGACGCGgacgGCg -3' miRNA: 3'- gACGCUUa---------UUUCUGUCUGCGCaaa-UG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 129843 | 0.73 | 0.998558 |
Target: 5'- -cGCG-AUGGAGGCGGAgGCGgagGCg -3' miRNA: 3'- gaCGCuUAUUUCUGUCUgCGCaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 22395 | 0.73 | 0.998814 |
Target: 5'- -cGCGGAUccGGAGACGGGCGCcgagACg -3' miRNA: 3'- gaCGCUUA--UUUCUGUCUGCGcaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 9407 | 0.72 | 0.999031 |
Target: 5'- gCUGCGggU-GAGGCGGACGUag--GCg -3' miRNA: 3'- -GACGCuuAuUUCUGUCUGCGcaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 25654 | 0.72 | 0.999489 |
Target: 5'- gCUGCGAGcguUGGAGAcCAGACGC---UGCg -3' miRNA: 3'- -GACGCUU---AUUUCU-GUCUGCGcaaAUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 103091 | 0.72 | 0.999593 |
Target: 5'- -gGCGAucccGGGGACGGGCGCGgc-ACg -3' miRNA: 3'- gaCGCUua--UUUCUGUCUGCGCaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 98094 | 0.71 | 0.999746 |
Target: 5'- -aGCGGAUGAcggGGACGG-CGCGgg-ACg -3' miRNA: 3'- gaCGCUUAUU---UCUGUCuGCGCaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 57940 | 0.7 | 0.999882 |
Target: 5'- -aGCGGGagauAGACGGGCGCGgcgcgGCg -3' miRNA: 3'- gaCGCUUauu-UCUGUCUGCGCaaa--UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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