Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8983 | 3' | -44.7 | NC_002512.2 | + | 74650 | 0.66 | 1 |
Target: 5'- -cGCGAcgGgcGGGACGGcCGCGg--GCg -3' miRNA: 3'- gaCGCUuaU--UUCUGUCuGCGCaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 75549 | 0.68 | 0.999998 |
Target: 5'- -cGUGGcgGAGGACGacGACGCGg--ACg -3' miRNA: 3'- gaCGCUuaUUUCUGU--CUGCGCaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 192007 | 0.68 | 0.999992 |
Target: 5'- gCUGCGGAaGAccguccuGGCGGGCGCGggaGCg -3' miRNA: 3'- -GACGCUUaUUu------CUGUCUGCGCaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 192385 | 1.11 | 0.04411 |
Target: 5'- gCUGCGAAUAAAGACAGACGCGUUUACc -3' miRNA: 3'- -GACGCUUAUUUCUGUCUGCGCAAAUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 227129 | 0.67 | 1 |
Target: 5'- -aGCGggUGcAGAcCAGACGCa----- -3' miRNA: 3'- gaCGCuuAUuUCU-GUCUGCGcaaaug -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 149429 | 0.66 | 1 |
Target: 5'- -cGCGGcg-GGGGCGGGCGCGg---- -3' miRNA: 3'- gaCGCUuauUUCUGUCUGCGCaaaug -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 147054 | 0.67 | 1 |
Target: 5'- -cGCGGAccGGGGCGGgaACGUGUggGCg -3' miRNA: 3'- gaCGCUUauUUCUGUC--UGCGCAaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 123126 | 0.67 | 1 |
Target: 5'- -cGCGGGccgAGAGcCGGACGCGga-GCg -3' miRNA: 3'- gaCGCUUa--UUUCuGUCUGCGCaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 224180 | 0.67 | 0.999999 |
Target: 5'- -cGCGGAgagagAGAGACacacacacacGGACGCGgggACg -3' miRNA: 3'- gaCGCUUa----UUUCUG----------UCUGCGCaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 163069 | 0.68 | 0.999998 |
Target: 5'- gUGCGAGUGGAaACGGugGCa----- -3' miRNA: 3'- gACGCUUAUUUcUGUCugCGcaaaug -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 191032 | 0.67 | 0.999999 |
Target: 5'- cCUGCGAGgcGGGGCGcGGCGCa----- -3' miRNA: 3'- -GACGCUUauUUCUGU-CUGCGcaaaug -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 161696 | 0.67 | 0.999999 |
Target: 5'- -cGCGug-GAAGAUggAGACGCGgccgGCg -3' miRNA: 3'- gaCGCuuaUUUCUG--UCUGCGCaaa-UG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 92618 | 0.66 | 1 |
Target: 5'- -cGCGAcgAcGGACGGACgGCGgccgccgGCg -3' miRNA: 3'- gaCGCUuaUuUCUGUCUG-CGCaaa----UG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 127217 | 0.67 | 0.999999 |
Target: 5'- -gGgGGAUGAgggaGGugAGACGCGg--GCa -3' miRNA: 3'- gaCgCUUAUU----UCugUCUGCGCaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 175271 | 0.66 | 1 |
Target: 5'- -gGCGggUAGcuGGCGGcCGCGUacACg -3' miRNA: 3'- gaCGCuuAUUu-CUGUCuGCGCAaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 118916 | 0.67 | 0.999999 |
Target: 5'- gCUGUGGGaGAAGGgGGACGUGcugACg -3' miRNA: 3'- -GACGCUUaUUUCUgUCUGCGCaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 227610 | 0.68 | 0.999998 |
Target: 5'- -aGCGGccgGAGGGCGGGCgGCGgcgGCg -3' miRNA: 3'- gaCGCUua-UUUCUGUCUG-CGCaaaUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 196830 | 0.68 | 0.999994 |
Target: 5'- uCUGCGAcgGGcugcggcGGAUGGACGcCGUcUACg -3' miRNA: 3'- -GACGCUuaUU-------UCUGUCUGC-GCAaAUG- -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 228721 | 0.66 | 1 |
Target: 5'- -cGCGGggGAAGACGuGAUGCGg---- -3' miRNA: 3'- gaCGCUuaUUUCUGU-CUGCGCaaaug -5' |
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8983 | 3' | -44.7 | NC_002512.2 | + | 126341 | 0.67 | 1 |
Target: 5'- -cGCGucc-GGGACGGGCGCGcacgACg -3' miRNA: 3'- gaCGCuuauUUCUGUCUGCGCaaa-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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