Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8983 | 5' | -58.2 | NC_002512.2 | + | 192421 | 1.07 | 0.004349 |
Target: 5'- gACGCGUCCGGUCUCGUUCUUCCCCCGc -3' miRNA: 3'- -UGCGCAGGCCAGAGCAAGAAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 43407 | 0.78 | 0.331899 |
Target: 5'- uACGUGUCU-GUgUCGUUCUUCCCCCc -3' miRNA: 3'- -UGCGCAGGcCAgAGCAAGAAGGGGGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 90575 | 0.74 | 0.522357 |
Target: 5'- gGCGaCGgccCCGGUCUC---CUUCCCCCGg -3' miRNA: 3'- -UGC-GCa--GGCCAGAGcaaGAAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 132028 | 0.74 | 0.544827 |
Target: 5'- gGCGgGUCC-GUCUCGgucgucgccuccgCUUCCCCCGc -3' miRNA: 3'- -UGCgCAGGcCAGAGCaa-----------GAAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 170559 | 0.73 | 0.550495 |
Target: 5'- cCGCGUCCaGGUCgcaGUUCU-CCUCCGu -3' miRNA: 3'- uGCGCAGG-CCAGag-CAAGAaGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 152688 | 0.73 | 0.55998 |
Target: 5'- -gGCGgCCGGUCUCG-UCgcgUCCCCGg -3' miRNA: 3'- ugCGCaGGCCAGAGCaAGaa-GGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 106544 | 0.73 | 0.56951 |
Target: 5'- aACGCGUagUCGucCUCGUUCUUCUCCCGc -3' miRNA: 3'- -UGCGCA--GGCcaGAGCAAGAAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 1449 | 0.72 | 0.61764 |
Target: 5'- cGCGCGUCCGcUCcucccCGUUCccgCCCCCGc -3' miRNA: 3'- -UGCGCAGGCcAGa----GCAAGaa-GGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 120834 | 0.72 | 0.637004 |
Target: 5'- gGCGgGUCCGGUCg------UCCCCCGa -3' miRNA: 3'- -UGCgCAGGCCAGagcaagaAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 1646 | 0.72 | 0.637004 |
Target: 5'- cCGCGUCCGGcacgUUCGccCUUCCCgCCGu -3' miRNA: 3'- uGCGCAGGCCa---GAGCaaGAAGGG-GGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 89797 | 0.72 | 0.637004 |
Target: 5'- -aGCGUCgucGUCUCGUUCUUCgUCCGg -3' miRNA: 3'- ugCGCAGgc-CAGAGCAAGAAGgGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 130626 | 0.72 | 0.646684 |
Target: 5'- cCGCGUCCGGcgucCUCGgggCgUCCCUCGa -3' miRNA: 3'- uGCGCAGGCCa---GAGCaa-GaAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 122874 | 0.71 | 0.675634 |
Target: 5'- aGCGCGcCCGGcUCUCGgcCga-CCCCGg -3' miRNA: 3'- -UGCGCaGGCC-AGAGCaaGaagGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 218747 | 0.71 | 0.68523 |
Target: 5'- cGCGUGUCCGGccCUCGgaCUccucggUUCCCCGu -3' miRNA: 3'- -UGCGCAGGCCa-GAGCaaGA------AGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 114695 | 0.71 | 0.704296 |
Target: 5'- aGCGCGUCCaGGUagcgCGUgaUCUggCCCCGg -3' miRNA: 3'- -UGCGCAGG-CCAga--GCA--AGAagGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 2135 | 0.71 | 0.704296 |
Target: 5'- -aGCGUUCGGUCgUCGcc--UCCCCCGu -3' miRNA: 3'- ugCGCAGGCCAG-AGCaagaAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 189921 | 0.7 | 0.723144 |
Target: 5'- -gGCGgcUCCGGUCUCGgcggcgaCUgcUCCCCCu -3' miRNA: 3'- ugCGC--AGGCCAGAGCaa-----GA--AGGGGGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 106762 | 0.7 | 0.732468 |
Target: 5'- cCGCGUCCGGcUCUCGg----CCCgCGg -3' miRNA: 3'- uGCGCAGGCC-AGAGCaagaaGGGgGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 25091 | 0.7 | 0.741713 |
Target: 5'- gACGCGgaccucCCGGg--CGUcucCUUCCCCCGg -3' miRNA: 3'- -UGCGCa-----GGCCagaGCAa--GAAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 225617 | 0.7 | 0.759938 |
Target: 5'- uCGuCGUCCGGUCcgaCGacCUguaUCCCCCGa -3' miRNA: 3'- uGC-GCAGGCCAGa--GCaaGA---AGGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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