miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8983 5' -58.2 NC_002512.2 + 141459 0.68 0.828181
Target:  5'- gACGCcUgCGGUUUCG-UCUUCgCCCUGg -3'
miRNA:   3'- -UGCGcAgGCCAGAGCaAGAAG-GGGGC- -5'
8983 5' -58.2 NC_002512.2 + 137806 0.69 0.775113
Target:  5'- cGCGCGUCCGGcggccguccgUCUCGUagcguuccagggcgUCUcgcagCUCCCGc -3'
miRNA:   3'- -UGCGCAGGCC----------AGAGCA--------------AGAa----GGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 104954 0.69 0.777758
Target:  5'- gGCGCGgcgCCGGcCUCGUg--UCUCUCGu -3'
miRNA:   3'- -UGCGCa--GGCCaGAGCAagaAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 79616 0.69 0.786497
Target:  5'- aGCGCcggGUCgCGGUaCUCGgcgUCgUCCCCCu -3'
miRNA:   3'- -UGCG---CAG-GCCA-GAGCa--AGaAGGGGGc -5'
8983 5' -58.2 NC_002512.2 + 38958 0.69 0.795112
Target:  5'- cCGgGUCUGGUuccgcugcCUCGUcaggucccUCUUCCUCCGg -3'
miRNA:   3'- uGCgCAGGCCA--------GAGCA--------AGAAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 142204 0.69 0.795112
Target:  5'- cGCGCGUCCcgucGGUCUCGacgUCgucgCCUUCGc -3'
miRNA:   3'- -UGCGCAGG----CCAGAGCa--AGaa--GGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 89109 0.69 0.803595
Target:  5'- cGCGCGUCUGGUCggcggUCGUUUggagggcgUCUaCCCGu -3'
miRNA:   3'- -UGCGCAGGCCAG-----AGCAAGa-------AGG-GGGC- -5'
8983 5' -58.2 NC_002512.2 + 184233 0.68 0.820136
Target:  5'- -gGgGUCCGcGUCaUCGaaCUUCCUCCGg -3'
miRNA:   3'- ugCgCAGGC-CAG-AGCaaGAAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 82073 0.68 0.820136
Target:  5'- cGCGCGUCC-GUCgCGUcCUcCUCCCGg -3'
miRNA:   3'- -UGCGCAGGcCAGaGCAaGAaGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 25091 0.7 0.741713
Target:  5'- gACGCGgaccucCCGGg--CGUcucCUUCCCCCGg -3'
miRNA:   3'- -UGCGCa-----GGCCagaGCAa--GAAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 106762 0.7 0.732468
Target:  5'- cCGCGUCCGGcUCUCGg----CCCgCGg -3'
miRNA:   3'- uGCGCAGGCC-AGAGCaagaaGGGgGC- -5'
8983 5' -58.2 NC_002512.2 + 114695 0.71 0.704296
Target:  5'- aGCGCGUCCaGGUagcgCGUgaUCUggCCCCGg -3'
miRNA:   3'- -UGCGCAGG-CCAga--GCA--AGAagGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 106544 0.73 0.56951
Target:  5'- aACGCGUagUCGucCUCGUUCUUCUCCCGc -3'
miRNA:   3'- -UGCGCA--GGCcaGAGCAAGAAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 1449 0.72 0.61764
Target:  5'- cGCGCGUCCGcUCcucccCGUUCccgCCCCCGc -3'
miRNA:   3'- -UGCGCAGGCcAGa----GCAAGaa-GGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 89797 0.72 0.637004
Target:  5'- -aGCGUCgucGUCUCGUUCUUCgUCCGg -3'
miRNA:   3'- ugCGCAGgc-CAGAGCAAGAAGgGGGC- -5'
8983 5' -58.2 NC_002512.2 + 120834 0.72 0.637004
Target:  5'- gGCGgGUCCGGUCg------UCCCCCGa -3'
miRNA:   3'- -UGCgCAGGCCAGagcaagaAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 1646 0.72 0.637004
Target:  5'- cCGCGUCCGGcacgUUCGccCUUCCCgCCGu -3'
miRNA:   3'- uGCGCAGGCCa---GAGCaaGAAGGG-GGC- -5'
8983 5' -58.2 NC_002512.2 + 130626 0.72 0.646684
Target:  5'- cCGCGUCCGGcgucCUCGgggCgUCCCUCGa -3'
miRNA:   3'- uGCGCAGGCCa---GAGCaa-GaAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 122874 0.71 0.675634
Target:  5'- aGCGCGcCCGGcUCUCGgcCga-CCCCGg -3'
miRNA:   3'- -UGCGCaGGCC-AGAGCaaGaagGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 2135 0.71 0.704296
Target:  5'- -aGCGUUCGGUCgUCGcc--UCCCCCGu -3'
miRNA:   3'- ugCGCAGGCCAG-AGCaagaAGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.