Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8983 | 5' | -58.2 | NC_002512.2 | + | 120834 | 0.72 | 0.637004 |
Target: 5'- gGCGgGUCCGGUCg------UCCCCCGa -3' miRNA: 3'- -UGCgCAGGCCAGagcaagaAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 1646 | 0.72 | 0.637004 |
Target: 5'- cCGCGUCCGGcacgUUCGccCUUCCCgCCGu -3' miRNA: 3'- uGCGCAGGCCa---GAGCaaGAAGGG-GGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 130626 | 0.72 | 0.646684 |
Target: 5'- cCGCGUCCGGcgucCUCGgggCgUCCCUCGa -3' miRNA: 3'- uGCGCAGGCCa---GAGCaa-GaAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 122874 | 0.71 | 0.675634 |
Target: 5'- aGCGCGcCCGGcUCUCGgcCga-CCCCGg -3' miRNA: 3'- -UGCGCaGGCC-AGAGCaaGaagGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 137806 | 0.69 | 0.775113 |
Target: 5'- cGCGCGUCCGGcggccguccgUCUCGUagcguuccagggcgUCUcgcagCUCCCGc -3' miRNA: 3'- -UGCGCAGGCC----------AGAGCA--------------AGAa----GGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 25091 | 0.7 | 0.741713 |
Target: 5'- gACGCGgaccucCCGGg--CGUcucCUUCCCCCGg -3' miRNA: 3'- -UGCGCa-----GGCCagaGCAa--GAAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 106762 | 0.7 | 0.732468 |
Target: 5'- cCGCGUCCGGcUCUCGg----CCCgCGg -3' miRNA: 3'- uGCGCAGGCC-AGAGCaagaaGGGgGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 114695 | 0.71 | 0.704296 |
Target: 5'- aGCGCGUCCaGGUagcgCGUgaUCUggCCCCGg -3' miRNA: 3'- -UGCGCAGG-CCAga--GCA--AGAagGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 2135 | 0.71 | 0.704296 |
Target: 5'- -aGCGUUCGGUCgUCGcc--UCCCCCGu -3' miRNA: 3'- ugCGCAGGCCAG-AGCaagaAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 175723 | 0.68 | 0.858702 |
Target: 5'- cCGCGUCCGGUCaUGa---UCCUCCGc -3' miRNA: 3'- uGCGCAGGCCAGaGCaagaAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 217675 | 0.67 | 0.886297 |
Target: 5'- uCGgGUCCGGgcgCUUGggcuggcUCUUCCCCg- -3' miRNA: 3'- uGCgCAGGCCa--GAGCa------AGAAGGGGgc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 111580 | 0.67 | 0.886297 |
Target: 5'- uCGuCGUCCGcGcgCUCGgcccggaUCUUCCUCCGg -3' miRNA: 3'- uGC-GCAGGC-Ca-GAGCa------AGAAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 155267 | 0.67 | 0.886297 |
Target: 5'- cGCGCGg-CGGUCUCGcgCUcCgCUCCGg -3' miRNA: 3'- -UGCGCagGCCAGAGCaaGAaG-GGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 132459 | 0.67 | 0.892703 |
Target: 5'- gGCGgGUCCGGggagCgcgCG-UCUcUCCCCGg -3' miRNA: 3'- -UGCgCAGGCCa---Ga--GCaAGAaGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 76644 | 0.67 | 0.892703 |
Target: 5'- uCGUcucCCGG-CUCGcUUCUUCUCCCGa -3' miRNA: 3'- uGCGca-GGCCaGAGC-AAGAAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 220138 | 0.67 | 0.892703 |
Target: 5'- gGCGgGUCCGG-CUCcg-CcgCCCCCa -3' miRNA: 3'- -UGCgCAGGCCaGAGcaaGaaGGGGGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 126538 | 0.67 | 0.898905 |
Target: 5'- cCGCGgccCCGGaCUCG-UCgacgCCCCCa -3' miRNA: 3'- uGCGCa--GGCCaGAGCaAGaa--GGGGGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 212786 | 0.66 | 0.904899 |
Target: 5'- -gGUGUCCGcGUCUU-UUC-UCCCCCu -3' miRNA: 3'- ugCGCAGGC-CAGAGcAAGaAGGGGGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 136271 | 0.66 | 0.926764 |
Target: 5'- cACGCG-CCcGUCcaacggcCGUUCUUCCCCg- -3' miRNA: 3'- -UGCGCaGGcCAGa------GCAAGAAGGGGgc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 192421 | 1.07 | 0.004349 |
Target: 5'- gACGCGUCCGGUCUCGUUCUUCCCCCGc -3' miRNA: 3'- -UGCGCAGGCCAGAGCAAGAAGGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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