miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8983 5' -58.2 NC_002512.2 + 111347 0.67 0.87969
Target:  5'- gACGCGaCCGcG-UUCGU--UUCCCCCGg -3'
miRNA:   3'- -UGCGCaGGC-CaGAGCAagAAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 111580 0.67 0.886297
Target:  5'- uCGuCGUCCGcGcgCUCGgcccggaUCUUCCUCCGg -3'
miRNA:   3'- uGC-GCAGGC-Ca-GAGCa------AGAAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 114695 0.71 0.704296
Target:  5'- aGCGCGUCCaGGUagcgCGUgaUCUggCCCCGg -3'
miRNA:   3'- -UGCGCAGG-CCAga--GCA--AGAagGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 120834 0.72 0.637004
Target:  5'- gGCGgGUCCGGUCg------UCCCCCGa -3'
miRNA:   3'- -UGCgCAGGCCAGagcaagaAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 122874 0.71 0.675634
Target:  5'- aGCGCGcCCGGcUCUCGgcCga-CCCCGg -3'
miRNA:   3'- -UGCGCaGGCC-AGAGCaaGaagGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 123492 0.66 0.904899
Target:  5'- cGCGgGUCCaGGgggugCUCGg----CCCCCGg -3'
miRNA:   3'- -UGCgCAGG-CCa----GAGCaagaaGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 125211 0.67 0.863751
Target:  5'- cGCGCGugucgucgucggUCCGGUCuuuauuucgcgcccUCGUUCgcgccgcccUCCCCCu -3'
miRNA:   3'- -UGCGC------------AGGCCAG--------------AGCAAGa--------AGGGGGc -5'
8983 5' -58.2 NC_002512.2 + 126538 0.67 0.898905
Target:  5'- cCGCGgccCCGGaCUCG-UCgacgCCCCCa -3'
miRNA:   3'- uGCGCa--GGCCaGAGCaAGaa--GGGGGc -5'
8983 5' -58.2 NC_002512.2 + 130626 0.72 0.646684
Target:  5'- cCGCGUCCGGcgucCUCGgggCgUCCCUCGa -3'
miRNA:   3'- uGCGCAGGCCa---GAGCaa-GaAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 132028 0.74 0.544827
Target:  5'- gGCGgGUCC-GUCUCGgucgucgccuccgCUUCCCCCGc -3'
miRNA:   3'- -UGCgCAGGcCAGAGCaa-----------GAAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 132459 0.67 0.892703
Target:  5'- gGCGgGUCCGGggagCgcgCG-UCUcUCCCCGg -3'
miRNA:   3'- -UGCgCAGGCCa---Ga--GCaAGAaGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 134149 0.67 0.901328
Target:  5'- cGCGCGUcCCGGcCggCGgggacggggagccgUCUUCCCCUc -3'
miRNA:   3'- -UGCGCA-GGCCaGa-GCa-------------AGAAGGGGGc -5'
8983 5' -58.2 NC_002512.2 + 136271 0.66 0.926764
Target:  5'- cACGCG-CCcGUCcaacggcCGUUCUUCCCCg- -3'
miRNA:   3'- -UGCGCaGGcCAGa------GCAAGAAGGGGgc -5'
8983 5' -58.2 NC_002512.2 + 137806 0.69 0.775113
Target:  5'- cGCGCGUCCGGcggccguccgUCUCGUagcguuccagggcgUCUcgcagCUCCCGc -3'
miRNA:   3'- -UGCGCAGGCC----------AGAGCA--------------AGAa----GGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 141459 0.68 0.828181
Target:  5'- gACGCcUgCGGUUUCG-UCUUCgCCCUGg -3'
miRNA:   3'- -UGCGcAgGCCAGAGCaAGAAG-GGGGC- -5'
8983 5' -58.2 NC_002512.2 + 142204 0.69 0.795112
Target:  5'- cGCGCGUCCcgucGGUCUCGacgUCgucgCCUUCGc -3'
miRNA:   3'- -UGCGCAGG----CCAGAGCa--AGaa--GGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 148074 0.68 0.820136
Target:  5'- gACGCGcCgCGGUCg---UCcgUCCCCCGg -3'
miRNA:   3'- -UGCGCaG-GCCAGagcaAGa-AGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 152654 0.67 0.872885
Target:  5'- cAC-CGcCCGGgcgCUCGUUCgcCUCCCGg -3'
miRNA:   3'- -UGcGCaGGCCa--GAGCAAGaaGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 152688 0.73 0.55998
Target:  5'- -gGCGgCCGGUCUCG-UCgcgUCCCCGg -3'
miRNA:   3'- ugCGCaGGCCAGAGCaAGaa-GGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 155267 0.67 0.886297
Target:  5'- cGCGCGg-CGGUCUCGcgCUcCgCUCCGg -3'
miRNA:   3'- -UGCGCagGCCAGAGCaaGAaG-GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.