Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8983 | 5' | -58.2 | NC_002512.2 | + | 1408 | 0.66 | 0.916257 |
Target: 5'- cCGCGUCuuCGGUCcccUCGg---UCCCCCu -3' miRNA: 3'- uGCGCAG--GCCAG---AGCaagaAGGGGGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 1449 | 0.72 | 0.61764 |
Target: 5'- cGCGCGUCCGcUCcucccCGUUCccgCCCCCGc -3' miRNA: 3'- -UGCGCAGGCcAGa----GCAAGaa-GGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 1646 | 0.72 | 0.637004 |
Target: 5'- cCGCGUCCGGcacgUUCGccCUUCCCgCCGu -3' miRNA: 3'- uGCGCAGGCCa---GAGCaaGAAGGG-GGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 2135 | 0.71 | 0.704296 |
Target: 5'- -aGCGUUCGGUCgUCGcc--UCCCCCGu -3' miRNA: 3'- ugCGCAGGCCAG-AGCaagaAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 2760 | 0.68 | 0.843785 |
Target: 5'- cUGCGUCUGGUCUgcacccgC-UCCCCCGu -3' miRNA: 3'- uGCGCAGGCCAGAgcaa---GaAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 25091 | 0.7 | 0.741713 |
Target: 5'- gACGCGgaccucCCGGg--CGUcucCUUCCCCCGg -3' miRNA: 3'- -UGCGCa-----GGCCagaGCAa--GAAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 38411 | 0.66 | 0.910684 |
Target: 5'- cGCGCuGUCCGGcgcCUCGUacUCggCCCaCCu -3' miRNA: 3'- -UGCG-CAGGCCa--GAGCA--AGaaGGG-GGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 38958 | 0.69 | 0.795112 |
Target: 5'- cCGgGUCUGGUuccgcugcCUCGUcaggucccUCUUCCUCCGg -3' miRNA: 3'- uGCgCAGGCCA--------GAGCA--------AGAAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 43407 | 0.78 | 0.331899 |
Target: 5'- uACGUGUCU-GUgUCGUUCUUCCCCCc -3' miRNA: 3'- -UGCGCAGGcCAgAGCAAGAAGGGGGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 76644 | 0.67 | 0.892703 |
Target: 5'- uCGUcucCCGG-CUCGcUUCUUCUCCCGa -3' miRNA: 3'- uGCGca-GGCCaGAGC-AAGAAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 79616 | 0.69 | 0.786497 |
Target: 5'- aGCGCcggGUCgCGGUaCUCGgcgUCgUCCCCCu -3' miRNA: 3'- -UGCG---CAG-GCCA-GAGCa--AGaAGGGGGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 82073 | 0.68 | 0.820136 |
Target: 5'- cGCGCGUCC-GUCgCGUcCUcCUCCCGg -3' miRNA: 3'- -UGCGCAGGcCAGaGCAaGAaGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 89109 | 0.69 | 0.803595 |
Target: 5'- cGCGCGUCUGGUCggcggUCGUUUggagggcgUCUaCCCGu -3' miRNA: 3'- -UGCGCAGGCCAG-----AGCAAGa-------AGG-GGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 89797 | 0.72 | 0.637004 |
Target: 5'- -aGCGUCgucGUCUCGUUCUUCgUCCGg -3' miRNA: 3'- ugCGCAGgc-CAGAGCAAGAAGgGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 90575 | 0.74 | 0.522357 |
Target: 5'- gGCGaCGgccCCGGUCUC---CUUCCCCCGg -3' miRNA: 3'- -UGC-GCa--GGCCAGAGcaaGAAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 98089 | 0.68 | 0.836066 |
Target: 5'- uGCGCGUUCGGggUCUUGgucgcCUUCCCgCCc -3' miRNA: 3'- -UGCGCAGGCC--AGAGCaa---GAAGGG-GGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 104694 | 0.66 | 0.928762 |
Target: 5'- cGCGCGaCCGGagUCUCGUccucUCUuuuuuauugucaccgUCCgCCCGc -3' miRNA: 3'- -UGCGCaGGCC--AGAGCA----AGA---------------AGG-GGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 104954 | 0.69 | 0.777758 |
Target: 5'- gGCGCGgcgCCGGcCUCGUg--UCUCUCGu -3' miRNA: 3'- -UGCGCa--GGCCaGAGCAagaAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 106544 | 0.73 | 0.56951 |
Target: 5'- aACGCGUagUCGucCUCGUUCUUCUCCCGc -3' miRNA: 3'- -UGCGCA--GGCcaGAGCAAGAAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 106762 | 0.7 | 0.732468 |
Target: 5'- cCGCGUCCGGcUCUCGg----CCCgCGg -3' miRNA: 3'- uGCGCAGGCC-AGAGCaagaaGGGgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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