Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8983 | 5' | -58.2 | NC_002512.2 | + | 225617 | 0.7 | 0.759938 |
Target: 5'- uCGuCGUCCGGUCcgaCGacCUguaUCCCCCGa -3' miRNA: 3'- uGC-GCAGGCCAGa--GCaaGA---AGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 220138 | 0.67 | 0.892703 |
Target: 5'- gGCGgGUCCGG-CUCcg-CcgCCCCCa -3' miRNA: 3'- -UGCgCAGGCCaGAGcaaGaaGGGGGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 218747 | 0.71 | 0.68523 |
Target: 5'- cGCGUGUCCGGccCUCGgaCUccucggUUCCCCGu -3' miRNA: 3'- -UGCGCAGGCCa-GAGCaaGA------AGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 217675 | 0.67 | 0.886297 |
Target: 5'- uCGgGUCCGGgcgCUUGggcuggcUCUUCCCCg- -3' miRNA: 3'- uGCgCAGGCCa--GAGCa------AGAAGGGGgc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 212786 | 0.66 | 0.904899 |
Target: 5'- -gGUGUCCGcGUCUU-UUC-UCCCCCu -3' miRNA: 3'- ugCGCAGGC-CAGAGcAAGaAGGGGGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 207471 | 0.69 | 0.768903 |
Target: 5'- uGCGCGUCCGaGUCgcUCGUcUCggCgCCCGu -3' miRNA: 3'- -UGCGCAGGC-CAG--AGCA-AGaaGgGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 192421 | 1.07 | 0.004349 |
Target: 5'- gACGCGUCCGGUCUCGUUCUUCCCCCGc -3' miRNA: 3'- -UGCGCAGGCCAGAGCAAGAAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 189921 | 0.7 | 0.723144 |
Target: 5'- -gGCGgcUCCGGUCUCGgcggcgaCUgcUCCCCCu -3' miRNA: 3'- ugCGC--AGGCCAGAGCaa-----GA--AGGGGGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 188942 | 0.69 | 0.786497 |
Target: 5'- gGCGCGg-CGGUCg-GUUCccucUCCCCCGu -3' miRNA: 3'- -UGCGCagGCCAGagCAAGa---AGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 184233 | 0.68 | 0.820136 |
Target: 5'- -gGgGUCCGcGUCaUCGaaCUUCCUCCGg -3' miRNA: 3'- ugCgCAGGC-CAG-AGCaaGAAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 175723 | 0.68 | 0.858702 |
Target: 5'- cCGCGUCCGGUCaUGa---UCCUCCGc -3' miRNA: 3'- uGCGCAGGCCAGaGCaagaAGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 175449 | 0.7 | 0.759938 |
Target: 5'- cCGUG-CCGGUCccccUGUccUCUUCCCCCa -3' miRNA: 3'- uGCGCaGGCCAGa---GCA--AGAAGGGGGc -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 170559 | 0.73 | 0.550495 |
Target: 5'- cCGCGUCCaGGUCgcaGUUCU-CCUCCGu -3' miRNA: 3'- uGCGCAGG-CCAGag-CAAGAaGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 169116 | 0.69 | 0.811938 |
Target: 5'- gGCGUucgGUCCGGUCgUCGcgCUccucgUCCgCCCGg -3' miRNA: 3'- -UGCG---CAGGCCAG-AGCaaGA-----AGG-GGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 155655 | 0.68 | 0.858702 |
Target: 5'- -gGCGUCCGG-C-CGUUCg--CCCCGc -3' miRNA: 3'- ugCGCAGGCCaGaGCAAGaagGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 155267 | 0.67 | 0.886297 |
Target: 5'- cGCGCGg-CGGUCUCGcgCUcCgCUCCGg -3' miRNA: 3'- -UGCGCagGCCAGAGCaaGAaG-GGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 152688 | 0.73 | 0.55998 |
Target: 5'- -gGCGgCCGGUCUCG-UCgcgUCCCCGg -3' miRNA: 3'- ugCGCaGGCCAGAGCaAGaa-GGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 152654 | 0.67 | 0.872885 |
Target: 5'- cAC-CGcCCGGgcgCUCGUUCgcCUCCCGg -3' miRNA: 3'- -UGcGCaGGCCa--GAGCAAGaaGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 148074 | 0.68 | 0.820136 |
Target: 5'- gACGCGcCgCGGUCg---UCcgUCCCCCGg -3' miRNA: 3'- -UGCGCaG-GCCAGagcaAGa-AGGGGGC- -5' |
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8983 | 5' | -58.2 | NC_002512.2 | + | 142204 | 0.69 | 0.795112 |
Target: 5'- cGCGCGUCCcgucGGUCUCGacgUCgucgCCUUCGc -3' miRNA: 3'- -UGCGCAGG----CCAGAGCa--AGaa--GGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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