miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8983 5' -58.2 NC_002512.2 + 98089 0.68 0.836066
Target:  5'- uGCGCGUUCGGggUCUUGgucgcCUUCCCgCCc -3'
miRNA:   3'- -UGCGCAGGCC--AGAGCaa---GAAGGG-GGc -5'
8983 5' -58.2 NC_002512.2 + 141459 0.68 0.828181
Target:  5'- gACGCcUgCGGUUUCG-UCUUCgCCCUGg -3'
miRNA:   3'- -UGCGcAgGCCAGAGCaAGAAG-GGGGC- -5'
8983 5' -58.2 NC_002512.2 + 148074 0.68 0.820136
Target:  5'- gACGCGcCgCGGUCg---UCcgUCCCCCGg -3'
miRNA:   3'- -UGCGCaG-GCCAGagcaAGa-AGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 184233 0.68 0.820136
Target:  5'- -gGgGUCCGcGUCaUCGaaCUUCCUCCGg -3'
miRNA:   3'- ugCgCAGGC-CAG-AGCaaGAAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 82073 0.68 0.820136
Target:  5'- cGCGCGUCC-GUCgCGUcCUcCUCCCGg -3'
miRNA:   3'- -UGCGCAGGcCAGaGCAaGAaGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 169116 0.69 0.811938
Target:  5'- gGCGUucgGUCCGGUCgUCGcgCUccucgUCCgCCCGg -3'
miRNA:   3'- -UGCG---CAGGCCAG-AGCaaGA-----AGG-GGGC- -5'
8983 5' -58.2 NC_002512.2 + 89109 0.69 0.803595
Target:  5'- cGCGCGUCUGGUCggcggUCGUUUggagggcgUCUaCCCGu -3'
miRNA:   3'- -UGCGCAGGCCAG-----AGCAAGa-------AGG-GGGC- -5'
8983 5' -58.2 NC_002512.2 + 38958 0.69 0.795112
Target:  5'- cCGgGUCUGGUuccgcugcCUCGUcaggucccUCUUCCUCCGg -3'
miRNA:   3'- uGCgCAGGCCA--------GAGCA--------AGAAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 142204 0.69 0.795112
Target:  5'- cGCGCGUCCcgucGGUCUCGacgUCgucgCCUUCGc -3'
miRNA:   3'- -UGCGCAGG----CCAGAGCa--AGaa--GGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 79616 0.69 0.786497
Target:  5'- aGCGCcggGUCgCGGUaCUCGgcgUCgUCCCCCu -3'
miRNA:   3'- -UGCG---CAG-GCCA-GAGCa--AGaAGGGGGc -5'
8983 5' -58.2 NC_002512.2 + 188942 0.69 0.786497
Target:  5'- gGCGCGg-CGGUCg-GUUCccucUCCCCCGu -3'
miRNA:   3'- -UGCGCagGCCAGagCAAGa---AGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 104954 0.69 0.777758
Target:  5'- gGCGCGgcgCCGGcCUCGUg--UCUCUCGu -3'
miRNA:   3'- -UGCGCa--GGCCaGAGCAagaAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 137806 0.69 0.775113
Target:  5'- cGCGCGUCCGGcggccguccgUCUCGUagcguuccagggcgUCUcgcagCUCCCGc -3'
miRNA:   3'- -UGCGCAGGCC----------AGAGCA--------------AGAa----GGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 207471 0.69 0.768903
Target:  5'- uGCGCGUCCGaGUCgcUCGUcUCggCgCCCGu -3'
miRNA:   3'- -UGCGCAGGC-CAG--AGCA-AGaaGgGGGC- -5'
8983 5' -58.2 NC_002512.2 + 175449 0.7 0.759938
Target:  5'- cCGUG-CCGGUCccccUGUccUCUUCCCCCa -3'
miRNA:   3'- uGCGCaGGCCAGa---GCA--AGAAGGGGGc -5'
8983 5' -58.2 NC_002512.2 + 225617 0.7 0.759938
Target:  5'- uCGuCGUCCGGUCcgaCGacCUguaUCCCCCGa -3'
miRNA:   3'- uGC-GCAGGCCAGa--GCaaGA---AGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 25091 0.7 0.741713
Target:  5'- gACGCGgaccucCCGGg--CGUcucCUUCCCCCGg -3'
miRNA:   3'- -UGCGCa-----GGCCagaGCAa--GAAGGGGGC- -5'
8983 5' -58.2 NC_002512.2 + 106762 0.7 0.732468
Target:  5'- cCGCGUCCGGcUCUCGg----CCCgCGg -3'
miRNA:   3'- uGCGCAGGCC-AGAGCaagaaGGGgGC- -5'
8983 5' -58.2 NC_002512.2 + 189921 0.7 0.723144
Target:  5'- -gGCGgcUCCGGUCUCGgcggcgaCUgcUCCCCCu -3'
miRNA:   3'- ugCGC--AGGCCAGAGCaa-----GA--AGGGGGc -5'
8983 5' -58.2 NC_002512.2 + 114695 0.71 0.704296
Target:  5'- aGCGCGUCCaGGUagcgCGUgaUCUggCCCCGg -3'
miRNA:   3'- -UGCGCAGG-CCAga--GCA--AGAagGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.