miRNA display CGI


Results 41 - 60 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 100344 0.74 0.288405
Target:  5'- gGCG-GGCGCCGGccacGCAGCaCGGCGuCg -3'
miRNA:   3'- aUGCuCCGCGGCC----UGUCGcGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 164630 0.74 0.288405
Target:  5'- -uCGAGGaGuCCGGACGGCagGCGGCGAUc -3'
miRNA:   3'- auGCUCCgC-GGCCUGUCG--CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 103487 0.74 0.288405
Target:  5'- gGCGGcGGCcgcggaccgcucGCCGGGCAGCGCguuGGUGACc -3'
miRNA:   3'- aUGCU-CCG------------CGGCCUGUCGCG---CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 145095 0.74 0.288405
Target:  5'- cGCGAGGCGUCGcGGCuGC-CGGcCGACa -3'
miRNA:   3'- aUGCUCCGCGGC-CUGuCGcGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 152 0.73 0.294763
Target:  5'- gGCGGGGCGCCGG-CGGaggaGCGcGCGcCg -3'
miRNA:   3'- aUGCUCCGCGGCCuGUCg---CGC-CGCuG- -5'
8984 5' -62.9 NC_002512.2 + 229555 0.73 0.294763
Target:  5'- gGCGGGGCGCCGG-CGGaggaGCGcGCGcCg -3'
miRNA:   3'- aUGCUCCGCGGCCuGUCg---CGC-CGCuG- -5'
8984 5' -62.9 NC_002512.2 + 131356 0.73 0.301229
Target:  5'- gGCGAGGUcCCaGcCGGCGCGGUGGCu -3'
miRNA:   3'- aUGCUCCGcGGcCuGUCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 153356 0.73 0.301229
Target:  5'- gGCGGGuccCGCUGGGCuGgGCGGCGGCu -3'
miRNA:   3'- aUGCUCc--GCGGCCUGuCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 15231 0.73 0.301229
Target:  5'- -cCGAGGCGCCGGgaggagagACuGCGaGGCGGCc -3'
miRNA:   3'- auGCUCCGCGGCC--------UGuCGCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 170806 0.73 0.301229
Target:  5'- gGCGAGGgGagcgaCGGggGCGGCaGCGGCGGCa -3'
miRNA:   3'- aUGCUCCgCg----GCC--UGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 155362 0.73 0.301229
Target:  5'- cACGAgcGGCGCUcgaGGuCGGgGCGGCGGCg -3'
miRNA:   3'- aUGCU--CCGCGG---CCuGUCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 81990 0.73 0.301229
Target:  5'- gGCgGGGGCGUCucggGGGCGGuCGCGGCGAg -3'
miRNA:   3'- aUG-CUCCGCGG----CCUGUC-GCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 80713 0.73 0.307805
Target:  5'- gGCGAgGGCGCgCGGGCccGCG-GGCGGCa -3'
miRNA:   3'- aUGCU-CCGCG-GCCUGu-CGCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 31646 0.73 0.307805
Target:  5'- --gGAGGCcgucCCGGACGGCGCGggcGCGGCc -3'
miRNA:   3'- augCUCCGc---GGCCUGUCGCGC---CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 100046 0.73 0.31449
Target:  5'- cGCcGGGCGCUGaGACgcgGGgGCGGCGGCg -3'
miRNA:   3'- aUGcUCCGCGGC-CUG---UCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 7283 0.73 0.320599
Target:  5'- cGCGAGGCcccggggGCCGGACAggccuccuccGCGaCGGCGGg -3'
miRNA:   3'- aUGCUCCG-------CGGCCUGU----------CGC-GCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 43019 0.73 0.320599
Target:  5'- -cCGAGGCGuuGGGCaggucgaGGCGCagguccucGGCGACg -3'
miRNA:   3'- auGCUCCGCggCCUG-------UCGCG--------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 39555 0.73 0.321284
Target:  5'- cGCGGgacGGUGCCaaGGGCGGCGacgGGCGACa -3'
miRNA:   3'- aUGCU---CCGCGG--CCUGUCGCg--CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 43072 0.73 0.321284
Target:  5'- -cCGAGGCaCCGGucccGgGGCGCGGCGAg -3'
miRNA:   3'- auGCUCCGcGGCC----UgUCGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 211284 0.73 0.328186
Target:  5'- uUGCGAGuGCGCCGaGuGCGGCauGCGGCGGu -3'
miRNA:   3'- -AUGCUC-CGCGGC-C-UGUCG--CGCCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.