miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 5' -57.8 NC_002512.2 + 10762 0.69 0.787343
Target:  5'- -aGCGCGuCGUCGGCcccgCCGcGGUAgGCg -3'
miRNA:   3'- caCGUGCuGCAGCCGa---GGC-UCGUgUG- -5'
8987 5' -57.8 NC_002512.2 + 209158 0.69 0.787343
Target:  5'- -aGCACGucguCGUCGGCa-CG-GCGCGCa -3'
miRNA:   3'- caCGUGCu---GCAGCCGagGCuCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 116132 0.69 0.787343
Target:  5'- uGUGCAcgccgcguauCGugGUCGGCaacauccCCGAGC-CGCu -3'
miRNA:   3'- -CACGU----------GCugCAGCCGa------GGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 82384 0.69 0.787343
Target:  5'- cUGCGgcCGGCGgUGGCUCCGcGCGCGg -3'
miRNA:   3'- cACGU--GCUGCaGCCGAGGCuCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 182047 0.69 0.796107
Target:  5'- gGUGCAgGAUGUCGGCcagCCGcgccgaccucAGC-CGCg -3'
miRNA:   3'- -CACGUgCUGCAGCCGa--GGC----------UCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 91922 0.69 0.796107
Target:  5'- -gGCGCGcCGUCGGCggCCGAcuuggucuuggGCGCGa -3'
miRNA:   3'- caCGUGCuGCAGCCGa-GGCU-----------CGUGUg -5'
8987 5' -57.8 NC_002512.2 + 129388 0.69 0.796107
Target:  5'- gGUGCuCGACGaccgCGGCcuccccaaggUCCGGGC-CACg -3'
miRNA:   3'- -CACGuGCUGCa---GCCG----------AGGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 222750 0.68 0.804733
Target:  5'- cUGCugGACGUCucccucgucugGGCcaaCGAGCACGg -3'
miRNA:   3'- cACGugCUGCAG-----------CCGag-GCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 26592 0.68 0.804733
Target:  5'- cGUGCACGGC--CGGCUUCGc-CACGCu -3'
miRNA:   3'- -CACGUGCUGcaGCCGAGGCucGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 217336 0.68 0.804733
Target:  5'- -aGCACGuACGgCGGCaUCGGGaCGCACg -3'
miRNA:   3'- caCGUGC-UGCaGCCGaGGCUC-GUGUG- -5'
8987 5' -57.8 NC_002512.2 + 91673 0.68 0.808143
Target:  5'- -cGCGCGGacgucCGUCGGCcccgacgguaggaugUCCGcgauGCACACg -3'
miRNA:   3'- caCGUGCU-----GCAGCCG---------------AGGCu---CGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 185168 0.68 0.812372
Target:  5'- -gGCGCGGCGUCcaGGacuucuuCUCCGAGaACGCg -3'
miRNA:   3'- caCGUGCUGCAG--CC-------GAGGCUCgUGUG- -5'
8987 5' -57.8 NC_002512.2 + 229460 0.68 0.813214
Target:  5'- -gGCuuuGCGGCGUCGGUcgCGGGCGCGa -3'
miRNA:   3'- caCG---UGCUGCAGCCGagGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 14531 0.68 0.813214
Target:  5'- -cGCGCGACGgagucgaCGGagCCGGGCACGa -3'
miRNA:   3'- caCGUGCUGCa------GCCgaGGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 143747 0.68 0.813214
Target:  5'- -gGcCGCGGCGUCGGCUuCCaGGUcCGCg -3'
miRNA:   3'- caC-GUGCUGCAGCCGA-GGcUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 56 0.68 0.813214
Target:  5'- -gGCuuuGCGGCGUCGGUcgCGGGCGCGa -3'
miRNA:   3'- caCG---UGCUGCAGCCGagGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 95981 0.68 0.821542
Target:  5'- -cGCAgCGGCgGUCGGCgUCCG-GCGcCGCg -3'
miRNA:   3'- caCGU-GCUG-CAGCCG-AGGCuCGU-GUG- -5'
8987 5' -57.8 NC_002512.2 + 101603 0.68 0.821542
Target:  5'- cGUGCggGCGGcCGUCGGC-CCG-GCGC-Cg -3'
miRNA:   3'- -CACG--UGCU-GCAGCCGaGGCuCGUGuG- -5'
8987 5' -57.8 NC_002512.2 + 130770 0.68 0.821542
Target:  5'- cGUGCGCGAucucuUGgagCGGC-CCGGGCuCGCc -3'
miRNA:   3'- -CACGUGCU-----GCa--GCCGaGGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 134399 0.68 0.821542
Target:  5'- cGUGUggauGCGGCGgCGGUUCCGGGUcUGCg -3'
miRNA:   3'- -CACG----UGCUGCaGCCGAGGCUCGuGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.