miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8991 5' -58.6 NC_002512.2 + 39857 0.66 0.883936
Target:  5'- ---gAGGCacucgaUCGgGACCUCUaACCGGGCa -3'
miRNA:   3'- cacgUCCG------GGCgUUGGAGA-UGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 218207 0.66 0.883936
Target:  5'- --uCGGGCCC-CcGCCUCggGCCGcGGCg -3'
miRNA:   3'- cacGUCCGGGcGuUGGAGa-UGGU-CCG- -5'
8991 5' -58.6 NC_002512.2 + 114414 0.66 0.883936
Target:  5'- -gGUuGGCCUGCGAgCUCUgcGCCAGcCg -3'
miRNA:   3'- caCGuCCGGGCGUUgGAGA--UGGUCcG- -5'
8991 5' -58.6 NC_002512.2 + 14235 0.66 0.883936
Target:  5'- -aGCAcuucuugacGGCCCGCAGCC----CCAcGGCg -3'
miRNA:   3'- caCGU---------CCGGGCGUUGGagauGGU-CCG- -5'
8991 5' -58.6 NC_002512.2 + 51321 0.66 0.883936
Target:  5'- aUGCcaucauGGCCUGCGuGCCUCUGaCGGGa -3'
miRNA:   3'- cACGu-----CCGGGCGU-UGGAGAUgGUCCg -5'
8991 5' -58.6 NC_002512.2 + 115868 0.66 0.883936
Target:  5'- -cGC--GCCCGguGCCgCUGCgGGGCc -3'
miRNA:   3'- caCGucCGGGCguUGGaGAUGgUCCG- -5'
8991 5' -58.6 NC_002512.2 + 221628 0.66 0.883936
Target:  5'- -aGCGGGUCCacccgGCGGCC-CUGCUcuacGGCg -3'
miRNA:   3'- caCGUCCGGG-----CGUUGGaGAUGGu---CCG- -5'
8991 5' -58.6 NC_002512.2 + 170337 0.66 0.883936
Target:  5'- gGUGCAGGaacucgguggCCGCGAUCagCgugGCCAGGg -3'
miRNA:   3'- -CACGUCCg---------GGCGUUGGa-Ga--UGGUCCg -5'
8991 5' -58.6 NC_002512.2 + 105518 0.66 0.883936
Target:  5'- -cGCAGGaCgCCgugGCAGCCgaaCUGCCcGGCc -3'
miRNA:   3'- caCGUCC-G-GG---CGUUGGa--GAUGGuCCG- -5'
8991 5' -58.6 NC_002512.2 + 26205 0.66 0.879865
Target:  5'- aGUGCAcauaucuauugggacGGaaCGCAGCCgUCUAUCAGGg -3'
miRNA:   3'- -CACGU---------------CCggGCGUUGG-AGAUGGUCCg -5'
8991 5' -58.6 NC_002512.2 + 103496 0.66 0.877109
Target:  5'- -cGCccgGGGCCCcgGGCgCUCUcCCGGGCg -3'
miRNA:   3'- caCG---UCCGGGcgUUG-GAGAuGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 71581 0.66 0.877109
Target:  5'- -cGCcGGacgaCCGCGGCCUUggggGCC-GGCa -3'
miRNA:   3'- caCGuCCg---GGCGUUGGAGa---UGGuCCG- -5'
8991 5' -58.6 NC_002512.2 + 205058 0.66 0.877109
Target:  5'- -cGCGGGCCCG-GACCUaCUGgCuGGa -3'
miRNA:   3'- caCGUCCGGGCgUUGGA-GAUgGuCCg -5'
8991 5' -58.6 NC_002512.2 + 176457 0.66 0.877109
Target:  5'- gGUGuCGGGuUCCGCGGCuCUCUucuCCuggauGGCg -3'
miRNA:   3'- -CAC-GUCC-GGGCGUUG-GAGAu--GGu----CCG- -5'
8991 5' -58.6 NC_002512.2 + 7353 0.66 0.877109
Target:  5'- -aGCcccGGCCCaccgcgacgGCGGCCgcggCgggcgGCCAGGCg -3'
miRNA:   3'- caCGu--CCGGG---------CGUUGGa---Ga----UGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 77122 0.66 0.877109
Target:  5'- -cGCgGGGUCCGau-CCUUUucgACCGGGCu -3'
miRNA:   3'- caCG-UCCGGGCguuGGAGA---UGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 202066 0.66 0.877109
Target:  5'- aGUGCuuGGCCCGCuugCggUACgGGGCg -3'
miRNA:   3'- -CACGu-CCGGGCGuugGagAUGgUCCG- -5'
8991 5' -58.6 NC_002512.2 + 181017 0.66 0.877109
Target:  5'- cGUGUagagggAGGCCCGCGuCCUggGCaggAGGCc -3'
miRNA:   3'- -CACG------UCCGGGCGUuGGAgaUGg--UCCG- -5'
8991 5' -58.6 NC_002512.2 + 128010 0.66 0.877109
Target:  5'- -cGCuuucGCCCGCGGCUgCUgcgGCCGGGUc -3'
miRNA:   3'- caCGuc--CGGGCGUUGGaGA---UGGUCCG- -5'
8991 5' -58.6 NC_002512.2 + 97243 0.66 0.875021
Target:  5'- aUGguGGCCuuCGCcaaguGCCUCUacuucaucagccugACCGGGUu -3'
miRNA:   3'- cACguCCGG--GCGu----UGGAGA--------------UGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.