Results 41 - 60 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8992 | 5' | -57.4 | NC_002512.2 | + | 105621 | 0.68 | 0.818578 |
Target: 5'- --gGCACCGgCCGUCGuCGGUCuccGAGa -3' miRNA: 3'- guaCGUGGUgGGCGGCuGCCAG---UUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 105200 | 0.68 | 0.83168 |
Target: 5'- gCGUGCGCCcggaucccgagguCCCGuCUGGCGGUgAGGg -3' miRNA: 3'- -GUACGUGGu------------GGGC-GGCUGCCAgUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 121127 | 0.68 | 0.834889 |
Target: 5'- --cGUACCcgaACCCGUCGACGGcggcCGAGa -3' miRNA: 3'- guaCGUGG---UGGGCGGCUGCCa---GUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 136494 | 0.68 | 0.834889 |
Target: 5'- -cUGCAUCACCgGCCucuCGGUCAcGUc -3' miRNA: 3'- guACGUGGUGGgCGGcu-GCCAGUuCA- -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 80575 | 0.68 | 0.834889 |
Target: 5'- uCcgGCGgCgaGCCCGCgCGGCGGUCGAc- -3' miRNA: 3'- -GuaCGUgG--UGGGCG-GCUGCCAGUUca -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 44403 | 0.68 | 0.850512 |
Target: 5'- gCGUGCGCCaugACCUG-CGGCGG-CAGGa -3' miRNA: 3'- -GUACGUGG---UGGGCgGCUGCCaGUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 2145 | 0.68 | 0.850512 |
Target: 5'- --cGuCGCCuccCCCGUcaCGGCGGUCGAGg -3' miRNA: 3'- guaC-GUGGu--GGGCG--GCUGCCAGUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 206539 | 0.68 | 0.85805 |
Target: 5'- uCGUGCucGCCGCacucguacaCCGCCGGCGGccCGGGg -3' miRNA: 3'- -GUACG--UGGUG---------GGCGGCUGCCa-GUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 87774 | 0.68 | 0.85805 |
Target: 5'- --aGCuCCGgCCGCCGACgGGUC-GGUa -3' miRNA: 3'- guaCGuGGUgGGCGGCUG-CCAGuUCA- -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 119220 | 0.68 | 0.85805 |
Target: 5'- --aGCACCaggACCgGCUGcccGCGGUCGAGc -3' miRNA: 3'- guaCGUGG---UGGgCGGC---UGCCAGUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 134149 | 0.67 | 0.865397 |
Target: 5'- --cGCGCguCCCgGCCGGCGGggaCGGGg -3' miRNA: 3'- guaCGUGguGGG-CGGCUGCCa--GUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 110525 | 0.67 | 0.865397 |
Target: 5'- uCGUcCACCAuCCCGCgGGCGGagAAGg -3' miRNA: 3'- -GUAcGUGGU-GGGCGgCUGCCagUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 139268 | 0.67 | 0.865397 |
Target: 5'- --cGCGCCGCCCGgCGcGCGGgggCGAa- -3' miRNA: 3'- guaCGUGGUGGGCgGC-UGCCa--GUUca -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 185474 | 0.67 | 0.872549 |
Target: 5'- cCGUGguCCugCCGCCG-CaGGUCAu-- -3' miRNA: 3'- -GUACguGGugGGCGGCuG-CCAGUuca -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 209212 | 0.67 | 0.872549 |
Target: 5'- --gGCGCCugcgGCCCGUC-ACGGUCAAa- -3' miRNA: 3'- guaCGUGG----UGGGCGGcUGCCAGUUca -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 70303 | 0.67 | 0.872549 |
Target: 5'- -cUGCGCCACCaaaGCCGGguacagGGUCcGGUa -3' miRNA: 3'- guACGUGGUGGg--CGGCUg-----CCAGuUCA- -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 116963 | 0.67 | 0.872549 |
Target: 5'- --cGCGCCACcgggCCGCCGACGccccGUCcGGg -3' miRNA: 3'- guaCGUGGUG----GGCGGCUGC----CAGuUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 146134 | 0.67 | 0.872549 |
Target: 5'- -cUGCACCugCCGCCGgaagaucggcauGCGGaUCGu-- -3' miRNA: 3'- guACGUGGugGGCGGC------------UGCC-AGUuca -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 162220 | 0.67 | 0.872549 |
Target: 5'- --gGCACCACU---CGACGGUCGAGc -3' miRNA: 3'- guaCGUGGUGGgcgGCUGCCAGUUCa -5' |
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8992 | 5' | -57.4 | NC_002512.2 | + | 12060 | 0.67 | 0.8795 |
Target: 5'- -cUGCcgaACCGCCCGCCGucgACGaUCGGGa -3' miRNA: 3'- guACG---UGGUGGGCGGC---UGCcAGUUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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