miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8993 5' -53.7 NC_002512.2 + 5635 0.68 0.961035
Target:  5'- gGCGUCGggCGCCGAcccgccucccccGCUCAUUAAagaucUGGa -3'
miRNA:   3'- -UGCAGCa-GCGGCU------------CGAGUAGUUc----ACC- -5'
8993 5' -53.7 NC_002512.2 + 128181 0.68 0.961035
Target:  5'- gACGagGUCGCCGAGCgggCcgCcGGcGGg -3'
miRNA:   3'- -UGCagCAGCGGCUCGa--GuaGuUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 47454 0.68 0.964373
Target:  5'- gGCGgaggcCGagGCCGAGUUCcgCAaggcGGUGGa -3'
miRNA:   3'- -UGCa----GCagCGGCUCGAGuaGU----UCACC- -5'
8993 5' -53.7 NC_002512.2 + 8242 0.68 0.970437
Target:  5'- aGCGUCG-CGCCGuagagcagGGC-CGcCGGGUGGa -3'
miRNA:   3'- -UGCAGCaGCGGC--------UCGaGUaGUUCACC- -5'
8993 5' -53.7 NC_002512.2 + 212994 0.68 0.970437
Target:  5'- --aUCGUCGCCGcGGC-CGUCGGGcccgGGg -3'
miRNA:   3'- ugcAGCAGCGGC-UCGaGUAGUUCa---CC- -5'
8993 5' -53.7 NC_002512.2 + 106638 0.67 0.975478
Target:  5'- gGCGcCgGUCGUCGAGCUCgaagaaGUCGAGcccgcacUGGg -3'
miRNA:   3'- -UGCaG-CAGCGGCUCGAG------UAGUUC-------ACC- -5'
8993 5' -53.7 NC_002512.2 + 83135 0.67 0.975724
Target:  5'- uCGUcccCGUCGUCGAGgUCGUCGGGcccGGc -3'
miRNA:   3'- uGCA---GCAGCGGCUCgAGUAGUUCa--CC- -5'
8993 5' -53.7 NC_002512.2 + 167461 0.67 0.980284
Target:  5'- aGCaUCGUCuCCGAGgUCGUCGAcGUGa -3'
miRNA:   3'- -UGcAGCAGcGGCUCgAGUAGUU-CACc -5'
8993 5' -53.7 NC_002512.2 + 184970 0.67 0.980284
Target:  5'- aGCG-CGUcCGCCGcGCggcCGUCGAcGUGGa -3'
miRNA:   3'- -UGCaGCA-GCGGCuCGa--GUAGUU-CACC- -5'
8993 5' -53.7 NC_002512.2 + 78982 0.67 0.981719
Target:  5'- aGCGUCGUCcgcgGCCGAgagaggugugGCUucggggugucagucCGUUGAGUGGg -3'
miRNA:   3'- -UGCAGCAG----CGGCU----------CGA--------------GUAGUUCACC- -5'
8993 5' -53.7 NC_002512.2 + 122504 0.67 0.982309
Target:  5'- aGCGUCGUCGgacagcuuuUCGugcAGCUCGUCAucgGGg -3'
miRNA:   3'- -UGCAGCAGC---------GGC---UCGAGUAGUucaCC- -5'
8993 5' -53.7 NC_002512.2 + 194239 0.67 0.983994
Target:  5'- gUGUCGUCGUCGAGCaugaugaUAUUcgcggccgccgagGAGUGGa -3'
miRNA:   3'- uGCAGCAGCGGCUCGa------GUAG-------------UUCACC- -5'
8993 5' -53.7 NC_002512.2 + 84322 0.67 0.984173
Target:  5'- cGCGUCGcgCGCCGcAGCgUCGccgcguccUCGAGcGGg -3'
miRNA:   3'- -UGCAGCa-GCGGC-UCG-AGU--------AGUUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 166772 0.67 0.984173
Target:  5'- uCGUCGggguggguuaUCGCCG-GCgUCAUCGaaaucaagGGUGGg -3'
miRNA:   3'- uGCAGC----------AGCGGCuCG-AGUAGU--------UCACC- -5'
8993 5' -53.7 NC_002512.2 + 113689 0.66 0.985884
Target:  5'- gACGUUGgCGCCGAagagCAUCuuguAGUGGg -3'
miRNA:   3'- -UGCAGCaGCGGCUcga-GUAGu---UCACC- -5'
8993 5' -53.7 NC_002512.2 + 90172 0.66 0.985884
Target:  5'- uCGUCGUgGCgGGGUUUcgCGAGaGGa -3'
miRNA:   3'- uGCAGCAgCGgCUCGAGuaGUUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 67644 0.66 0.985884
Target:  5'- -gGUCGUCcacggGCCcccggacgcGGGCUCgaccGUCGAGUGGu -3'
miRNA:   3'- ugCAGCAG-----CGG---------CUCGAG----UAGUUCACC- -5'
8993 5' -53.7 NC_002512.2 + 217171 0.66 0.98745
Target:  5'- --aUCGUCGUCGGGUUCAUCGc---- -3'
miRNA:   3'- ugcAGCAGCGGCUCGAGUAGUucacc -5'
8993 5' -53.7 NC_002512.2 + 156203 0.66 0.988464
Target:  5'- gACGUCGUcagCGCCGAGCuggccuucagcuacUCGUCc-GUGu -3'
miRNA:   3'- -UGCAGCA---GCGGCUCG--------------AGUAGuuCACc -5'
8993 5' -53.7 NC_002512.2 + 72878 0.66 0.988879
Target:  5'- cCGUUGUCGCgGGGCUCGggcccgAAGcGGc -3'
miRNA:   3'- uGCAGCAGCGgCUCGAGUag----UUCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.