miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8993 5' -53.7 NC_002512.2 + 217893 0.66 0.991354
Target:  5'- gGCGgccgCGUCGUCGAGCggCGguaCGagacGGUGGc -3'
miRNA:   3'- -UGCa---GCAGCGGCUCGa-GUa--GU----UCACC- -5'
8993 5' -53.7 NC_002512.2 + 167461 0.67 0.980284
Target:  5'- aGCaUCGUCuCCGAGgUCGUCGAcGUGa -3'
miRNA:   3'- -UGcAGCAGcGGCUCgAGUAGUU-CACc -5'
8993 5' -53.7 NC_002512.2 + 113689 0.66 0.985884
Target:  5'- gACGUUGgCGCCGAagagCAUCuuguAGUGGg -3'
miRNA:   3'- -UGCAGCaGCGGCUcga-GUAGu---UCACC- -5'
8993 5' -53.7 NC_002512.2 + 217171 0.66 0.98745
Target:  5'- --aUCGUCGUCGGGUUCAUCGc---- -3'
miRNA:   3'- ugcAGCAGCGGCUCGAGUAGUucacc -5'
8993 5' -53.7 NC_002512.2 + 166454 0.66 0.988879
Target:  5'- gGCGaCGgCGCCGGGCUCG--AGGgcgGGg -3'
miRNA:   3'- -UGCaGCaGCGGCUCGAGUagUUCa--CC- -5'
8993 5' -53.7 NC_002512.2 + 166855 0.66 0.988879
Target:  5'- cACGUcCGgcgcucccugcUCGCCGAGCUCcugGUacGGUGGc -3'
miRNA:   3'- -UGCA-GC-----------AGCGGCUCGAG---UAguUCACC- -5'
8993 5' -53.7 NC_002512.2 + 215620 0.75 0.723625
Target:  5'- uGCGgcagCGUgGCCGAGCUCuUCGccGUGGg -3'
miRNA:   3'- -UGCa---GCAgCGGCUCGAGuAGUu-CACC- -5'
8993 5' -53.7 NC_002512.2 + 113181 0.71 0.884345
Target:  5'- cGCGaccggCGUCGCCGuccGCUCcgCGAGcGGg -3'
miRNA:   3'- -UGCa----GCAGCGGCu--CGAGuaGUUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 212994 0.68 0.970437
Target:  5'- --aUCGUCGCCGcGGC-CGUCGGGcccgGGg -3'
miRNA:   3'- ugcAGCAGCGGC-UCGaGUAGUUCa---CC- -5'
8993 5' -53.7 NC_002512.2 + 184970 0.67 0.980284
Target:  5'- aGCG-CGUcCGCCGcGCggcCGUCGAcGUGGa -3'
miRNA:   3'- -UGCaGCA-GCGGCuCGa--GUAGUU-CACC- -5'
8993 5' -53.7 NC_002512.2 + 156203 0.66 0.988464
Target:  5'- gACGUCGUcagCGCCGAGCuggccuucagcuacUCGUCc-GUGu -3'
miRNA:   3'- -UGCAGCA---GCGGCUCG--------------AGUAGuuCACc -5'
8993 5' -53.7 NC_002512.2 + 156077 0.66 0.991354
Target:  5'- gACGcCGggCGCCGgcAGUUCGUCGAGg-- -3'
miRNA:   3'- -UGCaGCa-GCGGC--UCGAGUAGUUCacc -5'
8993 5' -53.7 NC_002512.2 + 175581 0.69 0.949742
Target:  5'- gGCGggucaccaCGUCGCCGuGCggguccuUCGGGUGGg -3'
miRNA:   3'- -UGCa-------GCAGCGGCuCGagu----AGUUCACC- -5'
8993 5' -53.7 NC_002512.2 + 121577 0.66 0.990177
Target:  5'- cGCG-CGcCGCCauggaccacaccGAGCUCAUCAAGc-- -3'
miRNA:   3'- -UGCaGCaGCGG------------CUCGAGUAGUUCacc -5'
8993 5' -53.7 NC_002512.2 + 194239 0.67 0.983994
Target:  5'- gUGUCGUCGUCGAGCaugaugaUAUUcgcggccgccgagGAGUGGa -3'
miRNA:   3'- uGCAGCAGCGGCUCGa------GUAG-------------UUCACC- -5'
8993 5' -53.7 NC_002512.2 + 156312 0.7 0.921127
Target:  5'- cCGU-GUCGCacgggGAGCUCGUCGAGcGGc -3'
miRNA:   3'- uGCAgCAGCGg----CUCGAGUAGUUCaCC- -5'
8993 5' -53.7 NC_002512.2 + 188135 1.11 0.006344
Target:  5'- aACGUCGUCGCCGAGCUCAUCAAGUGGa -3'
miRNA:   3'- -UGCAGCAGCGGCUCGAGUAGUUCACC- -5'
8993 5' -53.7 NC_002512.2 + 109831 0.66 0.990177
Target:  5'- cACGUCGaacCGCCGGGCgUCGgggacCGGcGUGGc -3'
miRNA:   3'- -UGCAGCa--GCGGCUCG-AGUa----GUU-CACC- -5'
8993 5' -53.7 NC_002512.2 + 106638 0.67 0.975478
Target:  5'- gGCGcCgGUCGUCGAGCUCgaagaaGUCGAGcccgcacUGGg -3'
miRNA:   3'- -UGCaG-CAGCGGCUCGAG------UAGUUC-------ACC- -5'
8993 5' -53.7 NC_002512.2 + 5635 0.68 0.961035
Target:  5'- gGCGUCGggCGCCGAcccgccucccccGCUCAUUAAagaucUGGa -3'
miRNA:   3'- -UGCAGCa-GCGGCU------------CGAGUAGUUc----ACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.