miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 218662 0.74 0.348536
Target:  5'- gGAGGCGgauacCCGGGcACaCCGGGCCCgCCGGa -3'
miRNA:   3'- -CUCCGU-----GGCCCuUG-GGCUUGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 159152 0.74 0.355839
Target:  5'- uGAGGCgGCCGGGcgcgcuCCCGucCCCCCGu -3'
miRNA:   3'- -CUCCG-UGGCCCuu----GGGCuuGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 201357 0.74 0.355839
Target:  5'- cGGGCGgCGGcGGACCCGAcagcucACCCCCu- -3'
miRNA:   3'- cUCCGUgGCC-CUUGGGCU------UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 121384 0.74 0.363248
Target:  5'- cGGGCGCCGGG--CCCGGccucGCCCuuGAc -3'
miRNA:   3'- cUCCGUGGCCCuuGGGCU----UGGGggCU- -5'
8994 3' -61.5 NC_002512.2 + 121436 0.74 0.363248
Target:  5'- -cGGCGCCGcccggggaGGGACCCcccGGCCCCCGGc -3'
miRNA:   3'- cuCCGUGGC--------CCUUGGGc--UUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 122797 0.74 0.363248
Target:  5'- cGGGcCGCCGaccGACCCGAccGCCCCCGAg -3'
miRNA:   3'- cUCC-GUGGCcc-UUGGGCU--UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 132988 0.74 0.363248
Target:  5'- cGGGUaguaGCagGGGAACCCG-GCCCCCGGg -3'
miRNA:   3'- cUCCG----UGg-CCCUUGGGCuUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 16938 0.73 0.386111
Target:  5'- gGAGGCGCCguaGGGcGACUCGGACCgggcgCCCGAu -3'
miRNA:   3'- -CUCCGUGG---CCC-UUGGGCUUGG-----GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 15232 0.73 0.38923
Target:  5'- cGAGGCGCCGGGagGagagacugcgaggcgGCCCGcgUCCCCGc -3'
miRNA:   3'- -CUCCGUGGCCC--U---------------UGGGCuuGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 134593 0.73 0.39394
Target:  5'- -cGGCGCCucguccgccgacGGGAACCCGAcCCCgCCGu -3'
miRNA:   3'- cuCCGUGG------------CCCUUGGGCUuGGG-GGCu -5'
8994 3' -61.5 NC_002512.2 + 153204 0.73 0.401872
Target:  5'- -cGGCACCcGGGACCCGuccCgCCCCGGu -3'
miRNA:   3'- cuCCGUGGcCCUUGGGCuu-G-GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 156996 0.73 0.409904
Target:  5'- -cGGcCGCCGcuucGGGCCCGAGCCCCgCGAc -3'
miRNA:   3'- cuCC-GUGGCc---CUUGGGCUUGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 77319 0.73 0.409904
Target:  5'- cGAGGCGaCGGGGuCUCGGGCUCCUGAc -3'
miRNA:   3'- -CUCCGUgGCCCUuGGGCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 94919 0.73 0.417217
Target:  5'- cGGGCAgacagcuCCGGaucacggcGAGCCgGAGCCCCCGGa -3'
miRNA:   3'- cUCCGU-------GGCC--------CUUGGgCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 117885 0.73 0.418035
Target:  5'- -cGGaCGCCGGGGGCCCGucgcuGCUCCaCGGc -3'
miRNA:   3'- cuCC-GUGGCCCUUGGGCu----UGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 220313 0.72 0.426263
Target:  5'- cGGGGgGCCGGGGG-CCGGGCUCCgGGg -3'
miRNA:   3'- -CUCCgUGGCCCUUgGGCUUGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 75085 0.72 0.434588
Target:  5'- cGAGGCGCCguuucGGGGGCUCGAcgucGCCgCCUGGc -3'
miRNA:   3'- -CUCCGUGG-----CCCUUGGGCU----UGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 10163 0.72 0.434588
Target:  5'- cGAGGCACgGGGGccGCCuCucGCgCCCCGAg -3'
miRNA:   3'- -CUCCGUGgCCCU--UGG-GcuUG-GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 221847 0.72 0.434588
Target:  5'- gGGGGCGCCucGGGACCgGGACCUCuCGGa -3'
miRNA:   3'- -CUCCGUGGc-CCUUGGgCUUGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 208423 0.72 0.451514
Target:  5'- cGGGCGCCGcu--CCCGGcgccgGCCCCCGAu -3'
miRNA:   3'- cUCCGUGGCccuuGGGCU-----UGGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.