Results 1 - 20 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8995 | 3' | -53.8 | NC_002512.2 | + | 78012 | 0.65 | 0.992531 |
Target: 5'- gCGGAUCGCCGg---CGcCCACgagucauccgguCGCg -3' miRNA: 3'- -GCCUAGCGGCucaaGCaGGUGau----------GCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 226669 | 0.65 | 0.992629 |
Target: 5'- cCGGGUccagacucucugagCGCCGGGccgUCGcCCGCggcgGCGUc -3' miRNA: 3'- -GCCUA--------------GCGGCUCa--AGCaGGUGa---UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 119534 | 0.66 | 0.986758 |
Target: 5'- -aGGUCGuCCGAGcugUUGgcCCGCUugGCg -3' miRNA: 3'- gcCUAGC-GGCUCa--AGCa-GGUGAugCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 102935 | 0.66 | 0.991918 |
Target: 5'- gGGAgCGCCaGAGggUCGaCCGggGCGCg -3' miRNA: 3'- gCCUaGCGG-CUCa-AGCaGGUgaUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 32083 | 0.66 | 0.989586 |
Target: 5'- gGGGUCGCCGAuggcggcccGggUGUCCu---CGCg -3' miRNA: 3'- gCCUAGCGGCU---------CaaGCAGGugauGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 108963 | 0.66 | 0.986758 |
Target: 5'- uCGGGUCGcCCGGGUcCGUCaGCaGgGCc -3' miRNA: 3'- -GCCUAGC-GGCUCAaGCAGgUGaUgCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 95838 | 0.66 | 0.99009 |
Target: 5'- cCGGAcgcgcagguugaacaUgGCCGGGUg-GUCCGCcaccGCGCa -3' miRNA: 3'- -GCCU---------------AgCGGCUCAagCAGGUGa---UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 99918 | 0.66 | 0.989586 |
Target: 5'- cCGGGggccCGCCGaAGggcggCGUCgGCUGCuGCu -3' miRNA: 3'- -GCCUa---GCGGC-UCaa---GCAGgUGAUG-CG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 175924 | 0.66 | 0.991918 |
Target: 5'- -aGGUUGUCGAGcaggGUCCuCUGCGCg -3' miRNA: 3'- gcCUAGCGGCUCaag-CAGGuGAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 167523 | 0.66 | 0.991918 |
Target: 5'- gCGGcUCuCCGAGaugUCGUUCgaagaGCUGCGCc -3' miRNA: 3'- -GCCuAGcGGCUCa--AGCAGG-----UGAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 148856 | 0.66 | 0.991918 |
Target: 5'- cCGGAaCGCCGGcugcCGccUCCGcCUGCGCa -3' miRNA: 3'- -GCCUaGCGGCUcaa-GC--AGGU-GAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 22067 | 0.66 | 0.991267 |
Target: 5'- gGGAgaCGCCGAGUcgggguucggagagcUCGUCCggccgggagACgACGCc -3' miRNA: 3'- gCCUa-GCGGCUCA---------------AGCAGG---------UGaUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 214414 | 0.66 | 0.991918 |
Target: 5'- cCGGAgcgcgccgCGcCCGAGgaccgCGUCCccguCUACGUc -3' miRNA: 3'- -GCCUa-------GC-GGCUCaa---GCAGGu---GAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 8194 | 0.66 | 0.988238 |
Target: 5'- aGGccgagcGUCGCCGGGcgggUGUCCGCgucccagACGUa -3' miRNA: 3'- gCC------UAGCGGCUCaa--GCAGGUGa------UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 164435 | 0.66 | 0.991918 |
Target: 5'- -aGGUCGCCGGGaa-G-CCGCUcgGCGCc -3' miRNA: 3'- gcCUAGCGGCUCaagCaGGUGA--UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 152927 | 0.66 | 0.986287 |
Target: 5'- uCGGGUCGCCaGAG-UCGggagcgacuguggaUCCGCga-GCg -3' miRNA: 3'- -GCCUAGCGG-CUCaAGC--------------AGGUGaugCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 68368 | 0.66 | 0.991918 |
Target: 5'- cCGGGcUCGgCG-GUgcCGUCCGCgcaGCGCa -3' miRNA: 3'- -GCCU-AGCgGCuCAa-GCAGGUGa--UGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 90117 | 0.66 | 0.99081 |
Target: 5'- uGGAUCGCgGg---CGcCCGgUGCGCg -3' miRNA: 3'- gCCUAGCGgCucaaGCaGGUgAUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 126476 | 0.66 | 0.99081 |
Target: 5'- aCGGcgucuUCGaCGAGUUCGUggccCCGgaGCGCg -3' miRNA: 3'- -GCCu----AGCgGCUCAAGCA----GGUgaUGCG- -5' |
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8995 | 3' | -53.8 | NC_002512.2 | + | 70395 | 0.66 | 0.986758 |
Target: 5'- uCGGAUCGCaguacuucaGAcauuccgCGUCCAUcGCGCa -3' miRNA: 3'- -GCCUAGCGg--------CUcaa----GCAGGUGaUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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